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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTGTTTCAAACCTTAGATTACAGTGTCGAATCAATCCTTCTGCTTATCTTTCTGCAAGTGTCAGgtaatgctttgtttgacaactgacagacttctatcacactttggatggtacttgttccaagttactaatggttcagttttctcaattttaatttatgaca...

Basic information

species Glycine max
transcript GLYMA15G00880.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00880.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 24
ATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTGTTTCAAACCTTAGATTACAGTGTCGAATCAATCCTTCTGCTTATCTTTCTGCAAGTGTCAGgtaat------gctttgtttgacaactgacagacttctatcacactttggatggtacttgttccaagttactaatggttcagttttctcaattttaatttatgaca
||||||| || ||||||||||| ||||||||||| |||| | |||| || ||  |||  ||||| || |||||| ||||||| ||| |||| ||||||||||| |      ||| |||  | ||  ||  |    | |   | | | |   |  |  |  | | | | |  |||  |||   || | |||||| ||||| |||   
ATGCCAGTTTCTTAGATGCAACTGTCTGTGTATTCAGTGCTGCAAATCTCAGGCTACGATGTCGTATTAATCCTACTGCTTACCTTCCTGCCAGTGTCAGgtatttactttgctctgtgggccaggtgggatttattttgaaaaatctcctttatcttgatacaatgcttttaa--gttggtttgtttcaattataatt-atg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994789|gb|BQ786317.1|BQ786317
EST:     AGATTACAGTGTCGAATCAATCCTTCTGCTTATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACAGTGTCGAATCAATCCTTCTGCTTATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctacagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA