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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct...

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 26
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct
||||||||||||  |||||||||| |||||||||||||| ||||| | ||||||  | ||| ||||||||||||| ||||||||||||||||| || ||||| || |     |||  ||  | |   ||    ||  || |     ||  |     | || |   | | |    | |  | ||||  ||  |        
AGCTTTGAATGAGCTTTATGTTGAAGAGGAGGACTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAAAAGgtaaagcgattatatgattgtactgcttattgatgttatttttccttttttattttattttgaa-taactaa--tggctggaatgccttgatcag-----

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 26
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct
| ||||||||||  |||||||||| |||||||| ||||| ||||| | ||||||  | ||| ||||||||||||| ||||||||||||||||| |||||||| || |      ||  ||  | |   ||    ||  || |     ||  |    |  ||      |   ||| |    | ||||  ||  |        
ATCTTTGAATGAGCTTTATGTTGAAGAGGAGGATTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAGAAGgtaaagcgattagatgattgtactgcttattgatgttatttttccttttttttttattttgaataactaatggct----ggaatgccttgatcag-----

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 3
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtg---aatcttccgt--atctttcaa-----attgctaaaattgaaatctgaatcttactgagaaacttaggg--gtcatttggtttgaagaaatgtttttttttttttct---
||| ||||| ||| |||||||||| ||||| ||||| || ||||| | ||||||| | ||| ||||||||||||| || || ||||||||||| ||||||||    |||   | |   ||||| ||      ||||||     ||   |   |||| | |   | |  ||      |   |||  ||| |  |  ||| |   ||| |       
AGCCTTGAACGAACTTTATGTTGAAGAGGAAGACTACGAGAGACTCCGTGAATCAGTTGATATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaatagccagataatcttgcagtgcctattgctgctgctgttgttgtaatcgtgcgatgcatattgttactgctttttaatttaataacctgtgtccatttctggagcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 3
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct-------
||| ||||||||  |||||||||| ||||| |||||||| ||||| | ||||||| | ||  ||||||||||||| || || ||||||||||| ||||||||  |        |  |    | |  |||   |||   |   |||     || ||  ||||  | |  | |  |      || |   | | ||  |||||       
AGCCTTGAATGAGCTTTATGTTGAAGAGGAAGACTATGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaacagccagatgcgcagtgcctattgttgttgttgtaat---ggtgtgatgcttattgttactgttttcaatttaattacctgtgttcatttcttgagcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM2G062042_T02 (Zea mays), 5'ss of exon 11
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct---
||| ||||||||| ||||||| || || |||||||| || ||||| | ||||||| | ||  ||||||||||||| || ||||| |||||||| |||||||| ||       ||    | |||| || | |   |   |   | || ||  |       ||  | |  |||  ||| |  | |||| ||  ||| ||      
AGCCTTGAATGAACTTTATGTCGAAGATGAGGACTACGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaa------ataaaaataaaatagccaga-cagtcgtgcaattcctatcg------ctaccgct--tttaatttaataacatgtgttaatttattgagcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 25
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct---
||| ||||||||  ||||||| || ||||||||||| || ||||| | ||||||| | ||  ||||||||||||| || ||||| |||||||| |||||||| ||       ||    | |||| || | |   |   |   | || |   |       ||  | |  |||  ||| |    |||| ||  ||| ||      
AGCCTTGAATGAGCTTTATGTCGAAGAGGAGGACTACGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaa------ataaaaataaaatagccaga-cagtcgtgcaattcctgtcg------ctaccgct--tttaatttaatagcatgtgttaatttattgagcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct---
                            ||||||||||| ||||| | ||||||| | ||   |||||||||||| || ||||| |||||||| |||||||| ||       ||    | |||| || | |   |   |   | || ||  |       ||  | |  |||  ||| |  | |||| ||  ||| ||      
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaa------ataaaaataaaatagccaga-cagtcgtgcaattcctatcg------ctaccgct--tttaatttaataacatgtgttaatttattgagcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 26
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtga-atcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct
||| || ||||  ||| |||| |||||||||||||||||||||||||  |||||||||||| ||||||| ||||| || |||||||| |||||||||||||||| |      | || | |    ||| |||  |||  |       |||  | || |    | |   |||  | | |   ||   || |            
AGCATTAAATGGTATTCATGTAGAGGAGGAGGACTATGATAGACTTCGGGAATCAATAGATATGCATGATAACTTTGACCAGATAGGCCTTGCACAGAAGgtgagagagattgaatttatt---ttgttaatgttggta-----ggcttcataagcagaacatgta-cataagatctagtgatgcgtgtggacag------