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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgtagcattaatactgtcaacaatttcattttagtttttactttataacctgttttccatttcactgatgaatattttccctgtgatgtattatag

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 24
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 25
TCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgtagcattaatactgtcaacaatttcattttagtttttactttataacctgttttccatttcactgatgaatattttccctgtgatgtattatag
 ||||||||| | ||||||||||| ||||| ||||||||  || | ||||| ||||| |||||| | |||||| || | || || ||||| ||||| |||||    ||  || || ||     ||| | || || | |   || |   ||||||   | ||      ||||   |||   | | || | | | ||
GCACTTCTATCTGCAAGAGCATCCTGATCTCATCAATGACCTTCTCAATGTACTTGCGCTTCGTTTGGATCATACAAGAGTCGTGGACATAATGCGCAAGgtttgtttctta-tggcagggccttc-tattggtctatcagttttgctctgtttcaaaattt-----tgaactgtttaattattatttgt-acag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 2
TCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgt-agcattaatactgtcaacaatttcattttagt-ttttactttataacctgttttccatttcactgatgaatattttccctgtgatgtattatag----
|||||||||||| ||||||||||| ||||| ||||||||| |  ||||||| |||||||||||| | |||||| |  | ||||| ||||| ||||| ||||| |||||    |  |  |   ||||| ||   |   |||   |   | ||   |||| | |||  |    ||| ||       || ||   | | |    
TCACTTCTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatggaaatttatttccttagcgcactttgaatagaagccctgtttcaaattccttccaaaatcttactgtcttgttgctctttggacag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 2
TCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgt-agcattaatactgtcaacaatttcattttagtttttactttataa--cctgttttcca-tttcactgatgaatattttccctg---tgatgtattatag----
|||||||||||| || |||||||| ||||| ||||||||| |  ||||||| |||||||||||| | |||||| |  | ||||| ||||| ||||| ||||| |||||    |     |   ||||| ||   |   ||    || ||  ||||||||| | || |       || || |  | ||   || ||   | | |    
TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
TCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgtagc-attaatactgtcaacaatttcattttagtttttactttataacctgttttccatttcactgatgaatattttc-cctgtgatgtattatag-------------------------
 ||||| || || ||||||||||| ||||| || |||||| || | ||||| ||||||||||| || || ||| | ||||| |||||||| ||||| |||||     ||  | ||| |     | |    ||  || ||  | |  |   ||||     ||||  |||    | |   |   | ||   | || | |                         
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag