Sequence
atgc intronic sequence ATGC exonic sequenceACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTgtaagcatctgaatattttattattaccatttacaaaatatgctacactggtcaacaacttgtccagcactatatgatataattatgagctctgggttattgaatttgtgatgtactactattgttagtttacagcttgtgttgcatctgttttactatataatgatcttgagtctccttcgacttttcag
Basic information
species | Glycine max |
transcript | GLYMA10G34080.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 24
lower sequence: AT5G04360.1 (Arabidopsis thaliana), 5'ss of exon 24
ACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTgtaagcatctgaatattttattattaccatttacaaaatatgctacactggtcaacaacttgtccagcac-tatatgatataattatgagctctgggttattgaatttgtgatgtactactattgttagtttacagcttgtgttgcatctgttttactatataatgatcttgagtctccttcgacttttcag
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GCTGGACTTCAGCTACAGTTCCAACAATTGGGGTGTTGGGCTTCCTCCAAAAGGGAAAAACGAACACAACTGGCCACTgtaagtgccgacgga-------atcgcc-ttcaataaatctgattgctgagtaaaccatacgcccattgcatgtttctgataccagtcagctcctgctgaacatgtctctag--------------------------------------------------------------------------------
upper sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv13s0019g05160.t01 (Vitis vinifera), 5'ss of exon 24
ACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTgtaagcatctgaatattttattattaccatttacaaaatatgctacact-ggtc----aacaacttgtccagcactatatgatataattatgagctctgg--gttattgaatttgtgatgtact-actattgttagtttacagcttgtgttgcatctgttttactatataatgatcttgagtctccttcgacttttcag
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GCTAGACTTCAGCTACAATTCTAACAACTGGGGTGTTGGCCTTCCACCAAAAGAGAAAAACGAGAAGAATTGGCCACTgtaagcatttattagttttctattcatcatttgatgaatgtgttgtttttagtttcaaaacaatttgaattattctgatcaatttcttttagagttaatattgtgatgcagagaactctttgctgattattgtttccttacattttgtcttgga--gaacatgctatctgatatattggaccctgtcttg---tttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394989|gb|EV264860.1|EV264860EST: TGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACT AATCAAACCAAGACTGGCAAACCCATCCTTCAGGCCTCAGAAGACTGACAT
genomic: TGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTgtaagcatct ... gacttttcagAATCAAACCAAGACTGGCAAACCCATCCTTCAGGCCTCAGAAGACTGACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTgtaagcatctgaatattttattattaccatttacaaaatatgctacactggtcaacaacttgtccagcactatatgatataattatgagctctgggttattgaatttgtgatgtactactattgttagtttacagcttgtgttgcatctgttttactatataatgatcttgagtctccttcgacttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC