1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
AATTCTCAGAGTCATTTTAGTGAAAGAAGATTTGGCACCTGACGTTGATTTTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgtatatttatgtatttttcacttcctttcttggtttctggagaaggtaccatctgtttctacataaaatattctcattgttatcttttgattgcag
species | Glycine max |
transcript | GLYMA10G02400.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|192316676|gb|FK009361.1|FK009361
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: GGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|58019392|gb|CX706134.1|CX706134
genomic: GGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|15814532|gb|BI786807.1|BI786807
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|26057754|gb|CA800668.1|CA800668
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGATAGATCTTGGAGAAGEST: gi|192316471|gb|FK009296.1|FK009296
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|22933686|gb|BU550825.1|BU550825
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|192312529|gb|FK005001.1|FK005001
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|37997295|gb|CF808884.1|CF808884
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: AATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|20811998|gb|BQ296476.1|BQ296476
genomic: AATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|192312514|gb|FK005000.1|FK005000
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAGEST: gi|22929414|gb|BU546553.1|BU546553
genomic: TTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
EST: GAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
genomic: GAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgta ... ttgattgcagAATCTGTGTGTCACAGCAGCTCACTGTCCAATACGAGAGATCTTGGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTCAGAGTCATTTTAGTGAAAGAAGATTTGGCACCTGACGTTGATTTTGAAGCAATAGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatgtatatttatgtatttttcacttcctttcttggtttctggagaaggtaccatctgtttctacataaaatattctcattgttatcttttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA