1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
ATAAGAATGATGAAATAAGGAAATCCAATACTTTGAATGATATATCAATGGATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAAgtaaatattatgtctttgttttattgtgtacattatcacttgcattctaatacttttttatcgtccacctccag
species | Glycine max |
transcript | GLYMA09G37610.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: GATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAA GTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTTEST: gi|10237535|gb|BE806423.1|BE806423
genomic: GATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAAgtaaatatta ... ccacctccagGTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTT
EST: ATCAAGATGATGATGATGATAAAGAGACCAAATATGCGTT-GGATCCAAA GTATGCANATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTTEST: gi|19348846|gb|BM893378.1|BM893378
genomic: ATCAAGATGATGATGATGATAAAGAGACCAAATAT-CGTTTGGATCCAAAgtaaatatta ... ccacctccagGTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTT
EST: GATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAA GTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTTEST: gi|15203141|gb|BI425909.1|BI425909
genomic: GATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAAgtaaatatta ... ccacctccagGTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTT
EST: GATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAA GTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTT
genomic: GATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAAgtaaatatta ... ccacctccagGTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAGAATGATGAAATAAGGAAATCCAATACTTTGAATGATATATCAATGGATCAAGATGATGATGATGATAAAGAGACCAAATATCGTTTGGATCCAAAgtaaatattatgtctttgttttattgtgtacattatcacttgcattctaatacttttttatcgtccacctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA