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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAATCATTATATAATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAGgtagggtatttgttccggcagttgacttttgcagttgtgcttcacttgttacattacagtttttcttcatggatggcatgttttgattagttacttgtgcctttgccag

Basic information

species Glycine max
transcript GLYMA08G40530.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 23
TGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAATCATTATATAATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAGgtagggtat---ttgttccggcagttgacttttgcagttgtgcttcacttgt-----tacattaca---gtttttcttcatggatggcatgttt--tgattagttacttgtgcctttgccag---------------------------------------------------------------------
||||||||||||||| |||||||||||||||||||| || || |||||||||||||| || ||||| ||||| || |||||||||||  | ||||||||||||   | |   || ||     |  |   |||     |  |  || |    |      | ||| ||   |||||   |||| | |   ||  |   || |   |||  |  ||  |    |                                                                      
TGGGTTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCTTTATATAATGTTATATTTACAGCCCTGCCAGTGATCATTGTTGGCCTCTTTGACAAGgtattctgtcctttattttataaacttgatttcaacttcataattgaaccatgggagcaaatttcattagttttgtatcattgcttttattctgaatgttctattaaataagcaatcttaaaaatttttatttgttgctttgctcatccatttttgcaatctaaatgaagaactactttaattttttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336296|gb|GR842475.1|GR842475
EST:     ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAG                         GATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA
genomic: ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAGgtagggtatt ... cctttgccagGATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA
EST: gi|15813203|gb|BI785478.1|BI785478
EST:     ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAG                         GATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA
genomic: ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAGgtagggtatt ... cctttgccagGATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA
EST: gi|8286488|gb|BE023975.1|BE023975
EST:     ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAG                         GATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA
genomic: ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAGgtagggtatt ... cctttgccagGATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA
EST: gi|192301651|gb|FG997607.1|FG997607
EST:     ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAG                         GATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA
genomic: ATGTTATCTTCACAGCGCTGCCTGTAATCATTGTTGGATTATTTGACAAGgtagggtatt ... cctttgccagGATGTCAGTTCATCTCTATCCAAGAAGTATCCTCAACTATACATGGAAGGA