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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctgctacagaaattatgttctgatatttatttaatgctagcattaattttacacactattactcaagtggttttctttttcttctatgattatgtatatctggaagacaagaataacagattggaattgtctgatgtttcttctcatag

Basic information

species Glycine max
transcript GLYMA07G36390.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36390.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 25
GTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctgctacagaaattatgttctgatatttatttaatgctagcattaattttacacactattactcaagtggttttctttttcttctatgattatgtatatctggaagacaagaataacagattggaattgtctgatgtttcttctcatag
||||||||| || |||||||| || ||| ||||||| |||  ||| ||||| ||| | |||||||||||||||| | || | || |  |||||   ||   || ||| |||    |||| |||   |||   |  |   |||  |     ||| || ||   || |  | || ||                                                     
GTTTGTGACCGGGTGCTCTCGAGGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGgtaattggtccttc--aaattcgtttgctatgttttttt---tctag-atttcctttttccttttcaactttatgaaatttgttgtttgactgt--tcatatag----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004710|gb|DB988996.1|DB988996
EST:     GGCCATTGCTT-GATCCACGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGCCATTGCTTGGTTTC-CGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|254336986|gb|GR843165.1|GR843165
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|16343557|gb|BI969152.1|BI969152
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|193548679|gb|FK505798.1|FK505798
EST:     ATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: ATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|208195226|gb|GD990427.1|GD990427
EST:     GGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|6746651|gb|AW317169.1|AW317169
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|6667616|gb|AW279067.1|AW279067
EST:     ATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: ATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|10255001|gb|BE822767.1|BE822767
EST:     GATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|6913262|gb|AW394792.1|AW394792
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGC
EST: gi|151405150|gb|EV274964.1|EV274964
EST:     GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAG                         GGCTTCCGGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGG
genomic: GGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGgtgaatgctg ... cttctcatagGGCTTCCGG-TAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGG