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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag

Basic information

species Glycine max
transcript GLYMA06G17940.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 24
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaac-tgcacttcaattcct---tttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag
||||  || | ||||| ||||  ||||| ||  | |||||||| || ||||||||||| |||||||| |||||||||||  |  ||||||| ||| || |||||    ||| ||   | | || || ||    |    | |  ||||  ||||  |      ||     ||    || |  | | | ||||   | |  |   ||| ||                                
ATGGTCTAAGAACAAAAGATAAAGAGCGTGTATTAGTACTTGCTGCAACTAATAGGCCATTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCTAGGCGgtgagtatcatatttttcattcattttaagatttgaactgtggtgctaattttatgatttttagataattgacttgactatgcatg-tgttttggtatatgtattgcttag------------------------------

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag
|||| |||||||| || ||||  || || || || || ||||  ||||| ||||||||||| ||||| ||||||||||||||  ||||| | || || ||||||          || ||  |        |||| | ||                |||  |||| |  ||  |    |  |  |||| ||    ||||    ||||    ||  ||| |  | | |           
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtga----------cagctataa-------ccttgtgtt----------------ggggttgggataatgaaaaattgctgtttgttgattt--ctaacc-atttggtcgttaattactactgtag-----------

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag
||||  |  | ||||| || |  || || ||||| |||||||| |||||||||||||| ||||| || || ||||||||  |  ||||||| ||  |||||| || | ||       | | | ||    | ||||| ||    |   | ||  | ||   |         ||             | |                                                 
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcact-----ccgtatttatgctacttttcttc---caactgtgacatggttataaataacccggccacaacttctcttcag------------------------------------------------

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGG-CTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag
| || |||||| ||  |||| |  || || ||||| || ||||||||||| ||| ||||||||||||| ||||||||||| ||  |  || |||| || |||| || |  |     ||  ||       ||||||    |     |||||||  ||        |   ||   ||   ||   |  ||  ||| | | | || |                                  
ACGGTCTTACG-ACTCAGGAAAGGGAACGTGTTCTGGTCCTTGCAGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTAGACGGTTGCCCCGTAGgtaaattata-----aatcgc-------ttccttggactaagctttttttgttaaattgacatgacagttataggttgtgaaaattttgtggtattgacttctgcag------------------------------

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
lower sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcact-tcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag
| ||  |  | ||||| || |  || || ||||| || ||||||||||| ||||| ||||||||||| || |||||||||||  | ||| ||||||  |||| |  |  || |  | || |  | |          ||| ||     ||        | |    | |  ||| | ||| |                                                          
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaa--tttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaacaagtttttggtattggcttctgcag---------------------------------------------------

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 24
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag
||||||| |||||||| ||||||||  | ||||| || ||||||||||| ||||| ||||||||||| ||||||||||| ||  | ||| |||| || |||| ||  |     | | |     |      |  |  |  |    ||         |||| |  | |  |  |    |||      || |  |                                             
ATGGCTTGCGCACAAAAGATACCGAAAGGGTTCTGGTGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGAAGGTTGCCGCGTAGgt-aaggcatcactgagccattttgttggactatcctactttatttccacaaactgggacttagttcttctgtaatggttcatcttttacag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670294|gb|BE191401.1|BE191401
EST:     AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAG                         ATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
genomic: AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactcca ... tcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
EST: gi|15338257|gb|BI498913.1|BI498913
EST:     AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAG                         ATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
genomic: AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactcca ... tcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
EST: gi|151404219|gb|EV274029.1|EV274029
EST:     AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAG                         ATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
genomic: AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactcca ... tcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
EST: gi|27427279|gb|CA938799.1|CA938799
EST:     AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAG                         ATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
genomic: AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactcca ... tcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
EST: gi|192318122|gb|FK010946.1|FK010946
EST:     AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAG                         ATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT
genomic: AATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactcca ... tcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGT