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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTGAGGAATGGATGCTTACAGGTGACCCACTAAAAGATGAAAGCATTCGTTCATCTCACAGATATGAAAGTGCCCCTGACATTACACTGTTCAAGgtatagcattgggttgatattctagtagtaaaatatcatattcagaatttactgctatttttttgtcacttcatagaatatttctgcatttctaagctct...

Basic information

species Glycine max
transcript GLYMA06G07850.2
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07850.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv04s0008g04520.t01 (Vitis vinifera), 5'ss of exon 23
AATTGCTGAGGAATGGATGCTTACAGGTGACCCACTAAAAGATGAAAGCATTCGTTCATCTCACAGATATGAAAGTGCCCCTGACATTACACTGTTCAAGgtatagcattgggttgatattctagtagtaaaatatcatattcagaatttactgctatttttttgtcacttc-----atagaatatttctgcatttctaagctct
 ||| |||||||||||||||| || |||||| |    || ||||||    |||||||||||||| ||||||||||||| |||||||| |  || ||||||||||    ||  ||| ||||  |   ||     | |  | | | |  | || ||  | ||| |   ||         ||||     |  ||| |||  ||     
TATTTCTGAGGAATGGATGCTGACCGGTGACACCAATAAGGATGAAGCTGTTCGTTCATCTCACCGATATGAAAGTGCTCCTGACATCATTCTCTTCAAGgtatgc--tttcgttaatatgttgcaagctttgttttttttgctgc-tataatgaaaatttgtcaccatccttgtagataggtggctcatgccttttcaaaaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208125140|gb|GD925224.1|GD925224
EST:     CTGACATTACACTGTTCAAG                         GCACTGCTTGGTCTTTGTTCTGATGAATCAGTCTCTGCCGAAATTGCCCTT
genomic: CTGACATTACACTGTTCAAGgtatagcatt ... cactttgtagGCACTGCTTGGTCTTTGTTCTGATGAATCAGTCTCTGCCAAAATTGCCCTT
EST: gi|19347548|gb|BM892428.1|BM892428
EST:     TTCGATCATCTCACAGATATGAAAGTGCCCCTGACATTACACTGTTCAAG                         GCACTGCTTGGTCTTTGTTCTGATGAATCAGTCTCTGCCAAA
genomic: TTCGTTCATCTCACAGATATGAAAGTGCCCCTGACATTACACTGTTCAAGgtatagcatt ... cactttgtagGCACTGCTTGGTCTTTGTTCTGATGAATCAGTCTCTGCCAAA