1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
AGCTTTTCTTGCCTTGGCTAAGGAACAATCTCGTGGAATTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGGgtactataactattattcaattttaagcataagtagaatggacatctttcaagaaaagtaactgtgttaagctttaattcagtttgtcaattttgcccac...
species | Glycine max |
transcript | GLYMA05G10590.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGG GAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAAEST: gi|192324762|gb|FK016863.1|FK016863
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGG GAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAAEST: gi|10709242|gb|BF008966.1|BF008966
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGG GAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAAEST: gi|12689538|gb|BG155874.1|BG155874
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAG-CACTCTTCTTCGG GAAATTGGACGTTTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTTTCTTGCCTTGGCTAAGGAACAATCTCGTGGAATTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGGgtactataactattattcaattttaagcataagtagaatggacatctttcaagaaaagtaactgtgttaagctttaattcagtttgtcaattttgcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa