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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCGCAGgttattgtaacaaatctcatttccgtcttcctgttttcagactaaattaaatttttccatagcattttttaggagattctgcttgatgtaaatatttatgtatttggtttcttgtaactatgcctttgtccaagtcttctaatttctgattacag

Basic information

species Glycine max
transcript GLYMA04G00430.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 24
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 26
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCGCAGgtta---ttgtaacaaatctcatttccgtcttcctgttttcagactaaa-ttaaatttttccatagcattttttaggagattctgcttgatgtaaatatttatgtatttggtttcttgtaactatgcctttgtccaagtcttctaatttctgattacag
 || || ||  |||| ||  |||||||    |||||||||||| | || || ||||||||||||||||| || |||||||| |||||||| ||||| ||||| |   |||| ||||| ||  |      | ||   || |||    |   |||||  |||     |||      | || ||||  |   ||| || | | |      ||| | |||    | ||| | ||                             
TATTACCTTCATATTGAAACTGGACACTGCAACCTTTATGCATCTCGTAGGTTCCCTTGAATCTGGACTCAAGGGGTTGGACACAAGTATTTCATCACAGgtgagaattgtgacaaaactgttaagacacatcaatttatcaagaaattcttaaagctttaagctgcaa-----aagatattcctcgaaatgcaactttctgaagcattgatatct----attatcctttcag--------------------------

upper sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 26
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCGCAGgttattgtaacaaatctcatttccgtcttcctgttttcagactaaattaaatttttccatagcattttttaggagattctgcttgatgtaaatatttatgtatttggtttcttgtaactatgcctttgtccaagtcttctaatttctgattacag
 ||   |||| |||| ||  |||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||  ||||| ||| ||||||| | ||||||  |||               | |     | ||||  || | |   |||  |||  || |||  ||||      | ||  ||  | | |  |||||| | | ||  ||||    |||   | | |                            
TATTGTTTTTATATTGAATCTGGATACAAACACCTTTATGCATATAGTTGGTTCCCTTGAATCTGGTCTTAAGGGTCTGGATGCAAATATCTCAGCACAGgtttgtgt---------------catgccaatattttaggatttatacaaacatttgtattgcaactttt------tcct--tttctatcatcatttat-tgtatgtattctc---actccacttct----------------------------