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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGgtaaaattatgcccaatctaatctcaatttttgcattcacaaatgcatgtatgagttctttaagcagttgaaatattttttgcagtgggtttcaagttat...

Basic information

species Glycine max
transcript GLYMA03G03120.2
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 24
lower sequence: LOC_Os02g51430.1 (Oryza sativa), 5'ss of exon 23
GAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGgtaaaattatgcccaatctaatctcaatttttgcattcacaaatgcatgtatgagttctttaagcagttgaaatattttttgcagtgggtttcaagttat----
| |  | ||    ||  | ||||||||||||||||| ||||| |||||||  ||||| ||||| ||||||||||| || ||||||||||| || ||||||||||  || |   ||| |||  ||| |||||  ||   |  | ||  | ||  ||| | || |    |    || |  |   |  ||   |  | |||||    
GCGGATTCTGGCTGATCTAAGGGAGCTTGCTTCAGCTGAGAGTCTGGATAGTTTTACTCTCATTTATACAAATATTCTGGAACATCAACCAGATTGCCCGgtaattttttcaacaagcta--ctcgattttgccagaaattagtg-gtttagtagtgcattcatttctgttgatgtgctgaact-tgatatctacgttatgtag

upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM2G070045_T01 (Zea mays), 5'ss of exon 18
GAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGgtaaaattatgcccaatctaatctcaatttttgcattcacaaatgcatgtatgagttctttaagcagttgaaatattttttgcagtgggtttcaagttat----------------
| |  | ||    ||  |||||||||| |||||||| |||||  |||||| |||||| ||||| || || |||||||| |||||||||||||| ||||||||||  || |||| || | ||| |   |   | |  | |    ||  ||| | |     | || ||| |      |||   |   ||   | ||| ||                  
GCGGATTCTGGCAGATATGAGGGAGCTAGCTTCAGCTGAGAGTTTGGATAGCTTTACTCTCATTTACACTAATATACTGGAACATCAACCTGATTGCCCGgtaattttctgcctaa-caaatatatttggcttcgctaatgcttgattgttttaaaatatgaaacagctcgttattttcccgttatgccctacaacttgacatctgcgttttttag

upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM2G161553_T01 (Zea mays), 5'ss of exon 5
GAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGgtaaaattatgcccaatcta-atctcaatttttgcattcacaaatgcatgtatgagttctttaagcagttgaaatattttttgcagtgggtt-tcaagttat------------------------------------------------------------------------------------------------
| |  | ||    ||  |||| || || |||||||| | |||  |||||| |||||| ||||| |  ||||||||||| |||||||||||||| ||||||||||  || |||| ||   | || |  |  |||||  | |    |   | |   |     | || || |   |    | | ||||  || || ||   ||                                                                                                  
GCGGATTCTGGCAGATATGAGAGATCTAGCTTCAGCTGGGAGTTTGGATAGCTTTACTCTCATTTTCACAAATATACTGGAACATCAACCTGATTGCCCGgtaattttctgcctaacaaatatattcagctttgc--taatgctttactattgaaaaatatgaaacaatatgagc-ctctctgcatcggtttatccctttgccagactccactcctgggagagactctggcattggatttgtccttttttatgttaatttctcgttatgtcctacaacttgacatctgtgttttttag

upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 24
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 23
GAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGgtaa-----------aattatgcccaatctaatctcaatttttgcattcacaaatgcatgtatgagttctttaagcagttgaaatattttttgcagtgggtttcaagttat
 ||  |||| || |||||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||| || || ||||||||||| || || || ||||           |||  ||  ||   || |  | ||||||   ||      |    |||| |  | |  ||  |    ||     | | ||  |   ||||       
CAGGATACTGAGTGACTTGAGAGAGCTTGCTTCCGCAGAGAGCCTGGATACTTTCACACTCATCTACACAAACATTCTTGAACATCAACCCGATTGTCCAgtaagtgctattaaaaatagtgttcatggtagtgaccatttttcgttttgtggttctgagtatcaaat-tccaaataacctaatagcctctagctat---tttc-------

upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 24
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 23
GAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGgtaaaattatgcccaatctaatctcaatttttgcattcacaaatgcatgtatgagttctttaagcagttgaaatattttttgcagtgggtttcaagttat-----
 ||  |||| || |||||||| ||||||||||| ||||||||||||||||| || |||||||| || ||||| || || |||||||||||||| || || ||||  |  |    ||  || | |  ||    | | | ||   | ||||   | |  | ||   || ||   |  || |  | |      |  || | |      
CAGGATACTGAGTGACTTGAGAGAGCTTGCTTCTGCAGAGAGCCTGGATACATTCACACTCATATACACAAACATTCTTGAACATCAACCTGATTGTCCAgtaag-tgctattaaaaatagtgttcat---ggtagtgaccgtttcatggtagtgaccgtttttcattttgta-gttctgagtatcaaactctaaataaccatca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283668|gb|BE021227.1|BE021227
EST:     CCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCG                         CCTGAAGTTGTTGAGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAG
genomic: CCTTTACACTCATCTATACAAATATACTCGAACATCAACCTGACTGCCCGgtaaaattat ... gctgttgtagCCTGAAGTTGTTGAGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAG