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GCAAGTAGAGCACTCCTTGATCTTGAATTCCACTGCAAGGGCATGGATTCAGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGgttgtaaatcttttccctgagagaggatttatagatgatgtgtgacaaactaaaaatttggttcagaatggtagaattaaaattatttatagaaatgttt...
species | Glycine max |
transcript | GLYMA17G13080.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAG GGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATGEST: gi|23052735|gb|BU577226.1|BU577226
genomic: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGgttgtaaatc ... tttattgcagGGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATG
EST: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAG GGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATGEST: gi|9565778|gb|BE475287.1|BE475287
genomic: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGgttgtaaatc ... tttattgcagGGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATG
EST: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAG GGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATGEST: gi|11412331|gb|BF424342.1|BF424342
genomic: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGgttgtaaatc ... tttattgcagGGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATG
EST: TTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAG GGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATGEST: gi|8283658|gb|BE021217.1|BE021217
genomic: TTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGgttgtaaatc ... tttattgcagGGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATG
EST: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAG -----TTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATG
genomic: AGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGgttgtaaatc ... tttattgcagGGCAGTTAAAACTAGCCACCCATGTTATGAGGCTATGTCAGATGAGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTAGAGCACTCCTTGATCTTGAATTCCACTGCAAGGGCATGGATTCAGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGgttgtaaatcttttccctgagagaggatttatagatgatgtgtgacaaactaaaaatttggttcagaatggtagaattaaaattatttatagaaatgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA