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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGGTGGTCAGAATCAAAAGCTAGAGTCAGTTATGGCCAAACCTCTGAAGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatttactagttagaaatttagaattatttacattattttttcattgaactacagaatatctagtctaattaataagagaattcttacccttgg...

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 23
lower sequence: AT1G73430.1 (Arabidopsis thaliana), 5'ss of exon 23
ATCAGGTGGTCAGAATCAAAAGCTAGAGTCAGTTATGGCCAAACCTCTGAAGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatttactagttagaaatttagaattatttacattattttttcattgaactacagaatatctagtctaattaataagagaattct-tacccttgg-
 || ||   ||||||||| ||  | || || || ||||| || || |||||||| || ||||| || || ||||||||||||| ||||||||||||||||||| |  ||  | || |      |||| | || |||   ||  ||     |  | ||    ||||   |    |  || |    |    || | |   |   
CTCCGGAACTCAGAATCACAAAGTTGATTCTGTCATGGCTAAGCCGCTGAAGGAACAAGCTTTCGCGACACCAGATAAGGTGGTTGAACTTGTTCAAAAGgtatgagataga-taatgtactgttta-agttttttctttttcttcaaggtatatctcagaaatagagatggcagctatttcttgttccctatgcagcttcc

upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 24
ATCAGGTGGTCAGAATCAAAAGCTAGAGTCAGTTATGGCCAAACCTCTGAAGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatttactagttagaaatttagaattatttacattattttttcattgaactacagaatatctagtctaattaataagagaattcttacccttgg----------
||| ||  ||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||| ||||| ||  | | ||    |      | ||| |  || | ||| || | ||     |  | | ||  | | ||| ||      |  ||    |||          
ATCGGGCAGTCAGAATCAAAAGCTAGACTCAGTTATGGCAAAACCACTCAAGGATCAAGCTTTTGCTACTCCTGATAAGGTGGCCGAACTTGTTCAGAAGgtatgtcatgta--aatcaggtgct------tgtttgctgtagtattttataggacattgcatcaacaagggtcactaacaaactg--ttgtagttgtggtcaagattcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722258|gb|BW662403.1|BW662403
EST:     AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG                         GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: gi|22931215|gb|BU548354.1|BU548354
EST:     AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG                         GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: gi|254339788|gb|GR857913.1|GR857913
EST:     AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTC-AAA-                         ---AGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: gi|208050427|gb|GD845538.1|GD845538
EST:     AGGTGGCTGAACTTGTTCAAAAG                         GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: AGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: gi|193730769|gb|FK666905.1|FK666905
EST:     AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG                         GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: gi|193614960|gb|FK564678.1|FK564678
EST:     AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAG                         GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: AGGATCAGGCTTTTGCTACTCCAGATAAGGTGGCTGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: gi|207696228|gb|GD677751.1|GD677751
EST:     TGAACTTGTTCAAAAG                         GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: TGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
EST: gi|193301547|gb|FK267728.1|FK267728
EST:     TGAACTTGTTCAAAAG                         GTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG
genomic: TGAACTTGTTCAAAAGgtaggtcatt ... ggtctaatagGTCAGGAATGCTATTCAGGAGCAACTGCCGGGGGTGATTGATAGGATGAAG