Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAGAAGGCAAAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttcttcctagctccctctctctctttgtttgtatatgttgtcgttatacttcattctattggctagtttttaacatgttatcttgtggcctgtag

Basic information

species Glycine max
transcript GLYMA15G04850.1
intron # 23
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524524|gb|BU083335.1|BU083335
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|207754880|gb|GD726899.1|GD726899
EST:     AGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|193608231|gb|FK555212.1|FK555212
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAA
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAA
EST: gi|208210781|gb|GE011786.1|GE011786
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAAGTAACATGATGAATTCT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAA-TA-CATGATGAATTCT
EST: gi|208184104|gb|GD981934.1|GD981934
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTT-GAAAG                         GATTGGAGGATGAAGTTATAGGG
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGG
EST: gi|207758023|gb|GD727761.1|GD727761
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|207735390|gb|GD710233.1|GD710233
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAG                         GATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGGCATTCACGAAATACATGATGAATTCTTT
EST: gi|207778265|gb|GD748828.1|GD748828
EST:     AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTT-GAAAG                         GATTGGAGGATGAAGTTATAGGG
genomic: AAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttctt ... tggcctgtagGATTGGAGGATGAAGTTATAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAGAAGGCAAAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGAAAGgtaatttcttcctagctccctctctctctttgtttgtatatgttgtcgttatacttcattctattggctagtttttaacatgttatcttgtggcctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT