Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTACTTGCAAGAACATCCTGATATTATAAATGATCTTCTTAATGTACTTGCCCTTCGTGTGGACCACACCCGTGTTGTGGATATAATGCGGAAGgtctgtaggtctcattctattttctaatgtgttaagttttaatcttcttttggtgaagttaataactgtttgaaaatattttatgcaatattcttatttgttgcttgattttttctggtttttag

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 23
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 25
TCACTTCTACTTGCAAGAACATCCTGATATTATAAATGATCTTCTTAATGTACTTGCCCTTCGTGTGGACCACACCCGTGTTGTGGATATAATGCGGAAGgtctgtaggtctcattcta---ttttctaatgtgtta--agttttaatcttcttttggtgaagttaataactgtttgaaaatattttatgcaatattcttatttgttgcttgattttttctggtttttag
 ||||||||  ||||||| ||||||||| | || ||||| ||||| ||||||||||| |||||| |||| || ||  | || ||||| |||||||| ||||| |||   ||| ||   |     ||||| ||   ||  ||||||  |||  ||      || ||   |||||||| |  ||  ||| | ||                                      
GCACTTCTATCTGCAAGAGCATCCTGATCTCATCAATGACCTTCTCAATGTACTTGCGCTTCGTTTGGATCATACAAGAGTCGTGGACATAATGCGCAAGgtttgtt--tcttatggcagggccttctattggtctatcagttttgctctgtttc----aaaattttgaactgtttaattattatttgtacag-------------------------------------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 25
TCACTTCTACTTGCAAGAACATCCTGATATTATAAATGATCTTCTTAATGTACTTGCCCTTCGTGTGGACCACACCCGTGTTGTGGATATAATGCGGAAGgtctgtaggtctcatt-ctattt-tctaatgtgttaagttttaatcttcttttggtg-----aagttaataactgtttgaaaatattttatgcaatattcttatttgttgcttgattttttctggtttttag
 ||||||||| |||| |||||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||||| || ||||| || |||||||| |||||||| | || |  || || ||| | | |||  |   | | |   |||||||| |||     || | | |||  |||| |||||  |||   ||||  | |  | || |   |||| | || ||| ||| ||
GCACTTCTACCTGCAGGAACATCCTGATCTTATTAATGATCTCCTTAATGTGCTTGCTCTTCGTGTGGACCACACTCGGGTTGTTGACATAATGCGAAAGgtctgcatgtttgcttactctttatgtgatggatattgctgtgtgcttcttttagtgggaacaaatgattaaaagtttaaaaatggttttgtcaatggtatcttatgct-tatgatctctt-tgggtttcag