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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAGgtaagctgaattttctagcaggaatttcttgtttcctgttatcactgtctgactgttgctttcatctttcaaaatgcatggacggaggtcaataaaggctgctgtgtgcttcctatgacattcttttttattcaagagagaaaagggtctaacacagaataagctaatatattttattgactgtgcag

Basic information

species Glycine max
transcript GLYMA14G11220.2
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11220.2 (Glycine max), 5'ss of exon 23
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 23
TTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAGgtaagctgaattttctagcaggaatttcttgtttcctgttatcactgtctgactgttgctttcatctttcaaaatgcatggacggaggtcaataaaggctgctgtgtgcttcctatgacattcttttttattcaagagagaaaagggtctaacacagaataagctaatatattttattgactgtgcag
|||||||||||| ||||||||||||||| ||||||| | ||  ||||| |||   |||| |||  |||||||||||||     |||  || | |  | |||| |    | | |||    |         ||    | | | ||||||   | ||     | ||    ||| |                                                                                          
TTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAGgtaatt---attgacttgaatcattttcct--cacattttacatataatgaggacttatgataagccttcaaatctcctgtgaatatgtttgaaaatgacatgac-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193422179|gb|FK387188.1|FK387188
EST:     TGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAG                         TTACATTATCTAAGGCTGCCATTCTTGGAATTACTTTGGGTGCCCTTGTGA
genomic: TGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAGgtaagctgaa ... gactgtgcagTTACATTATCTAAGGCTGCCATTCTTGGAATTACTTTGGGTGCCCTTGTGA
EST: gi|27424345|gb|CA935865.1|CA935865
EST:     TGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAG                         TTACATTATCTAAGGCTGCCATTCTTGGAATTACTTTGGGTGCCCTTGTGA
genomic: TGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAGgtaagctgaa ... gactgtgcagTTACATTATCTAAGGCTGCCATTCTTGGAATTACTTTGGGTGCCCTTGTGA
EST: gi|193362840|gb|FK324432.1|FK324432
EST:     TGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAG                         TTACATTATCTAAGGCTGCCATTCTTGGAATTACTTTGGGTGCCCTTGTGA
genomic: TGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAGgtaagctgaa ... gactgtgcagTTACATTATCTAAGGCTGCCATTCTTGGAATTACTTTGGGTGCCCTTGTGA