1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
GGCTAGGAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAgttggtttctcttcatatttgtgtattaatagtataaaattgcaatatgaatttttctcatactttcaagtttaactaatctttcag
species | Glycine max |
transcript | GLYMA13G28720.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAA AGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTEST: gi|24136997|gb|BU927507.1|BU927507
genomic: AATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAgttggtttct ... aatctttcagAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCT
EST: AATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAA AGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTEST: gi|298166870|gb|HO010309.1|HO010309
genomic: AATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAgttggtttct ... aatctttcagAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCT
EST: AATACGATGAGAGGGAGAGACAAGCTCACAAAGAGAAGAAACTTGCTAAA AGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTEST: gi|37997763|gb|CF809352.1|CF809352
genomic: AATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAgttggtttct ... aatctttcagAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCT
EST: AATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAA AGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCT
genomic: AATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAgttggtttct ... aatctttcagAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTAGGAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAgttggtttctcttcatatttgtgtattaatagtataaaattgcaatatgaatttttctcatactttcaagtttaactaatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA