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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCGgtaatttgtgaattatttagctgaacttcttgttcttactagatgggtgcatattaaacatggagttgatgctttgtgcttattgacttgattgcaaata...

Basic information

species Glycine max
transcript GLYMA11G27870.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 22
GCAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCGgtaatttgtgaattatttagctgaacttcttgttcttactagatgggtgcatattaaacatggagttgatgctttgtgcttattgacttgat-tgcaaata---
|| || ||||| ||  |||||||||| ||||||||||| |||||||| ||||| || || || | |||||  | || |   || |    |    |   ||   | ||  | |     |  | ||  |  |  |||| |  |   ||  |    |  || ||||| |    
GCGGTATTGAGAGCGTTATATGCTTACTTTGCTGACAGGCCTTTGAAAGAAATCCCACACATTGAGgtaaactatggacagttaaa--aactggcacatttgaattattttgccttctcctgaaagttca--tgatccacttaactcgtctcatgaatgtgcaattggta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336524|gb|CO980390.1|CO980390
EST:     TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCG                         GTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA
genomic: TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCGgtaatttgtg ... tgatttccagGTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA
EST: gi|51336471|gb|CO980337.1|CO980337
EST:     TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCG                         GTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA
genomic: TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCGgtaatttgtg ... tgatttccagGTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA
EST: gi|9564592|gb|BE474101.1|BE474101
EST:     TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCG                         GTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA
genomic: TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCGgtaatttgtg ... tgatttccagGTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA
EST: gi|22930234|gb|BU547373.1|BU547373
EST:     TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCG                         GTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA
genomic: TATATGCTTATTTTGCTGACAGACCTTTGAACGAAATTCCGCATATAGCGgtaatttgtg ... tgatttccagGTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAA