1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
ATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAATAGATGCATGGATAAATTTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGgttttgattttagaatattttcatttgcatgcccatttgtgtatcacatatacttagtaccttgcttgatattttcag
species | Glycine max |
transcript | GLYMA11G02580.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAG ATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGATEST: gi|16105685|gb|BI893425.1|BI893425
genomic: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGgttttgattt ... atattttcagATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGAT
EST: TGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGGAGAAG ATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGAEST: gi|24135932|gb|BU926442.1|BU926442
genomic: TGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACT-GGAGAAGgttttgattt ... atattttcagATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGA
EST: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAG ATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGEST: gi|193523836|gb|FK481007.1|FK481007
genomic: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGgttttgattt ... atattttcagATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTG
EST: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAG ATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGATEST: gi|151399522|gb|EV269393.1|EV269393
genomic: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGgttttgattt ... atattttcagATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGAT
EST: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAG ATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGATEST: gi|193732959|gb|FK668624.1|FK668624
genomic: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGgttttgattt ... atattttcagATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGAT
EST: TTAGAATGTTGGTCCAAAATGGAAATTCGNTACTTCATGCACTGGAGAAG ATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGAT
genomic: TTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGgttttgattt ... atattttcagATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAATAGATGCATGGATAAATTTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGgttttgattttagaatattttcatttgcatgcccatttgtgtatcacatatacttagtaccttgcttgatattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA