Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatactagtgtaactgtttatttgtaataacacttaagttggttattgcag

Basic information

species Glycine max
transcript GLYMA08G40530.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 23
lower sequence: LOC_Os10g27220.2 (Oryza sativa), 5'ss of exon 1
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatactagtgtaactgtttatttgtaataacacttaagttggttattgcag
||||||||| ||||| ||||||||||||||||| ||||| || || ||| | || ||||| ||||| |||||  |||||||||||||| || | |||||||||||  |||| |||   |||| |||| | | |||||   ||| |        |  ||| | | |   | ||||||
GCAAGCTGTTATGGCTAGCGATTTTGCCATTGCTCAGTTTCGATATCTTACCGACTTGCTCCTTGTACATGGAAGATGGTCATATTTGAGATTGTGCAAGgtata--gtttagttctttgcagtgtagatttgtgta-tagttcaagaaactgatgactgatgctttctgttgcag

upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 23
lower sequence: GRMZM2G020553_T01 (Zea mays), 5'ss of exon 2
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatactagtgtaactgtttatttgtaataacacttaagttggttattgcag
||||||||| ||||| || || ||||||||||||||||| ||||  ||| | |||||||||||||| ||||| |||||||| || ||| || | ||||||||||   ||| |  |  ||  | | ||  ||||  ||  |  ||    ||| | |   | |  |    | ||||||
GCAAGCTGTTATGGCTAGTGACTTTGCCATTGCACAGTTTCGTTTTCTTACTGATTTGCTTCTTGTACATGGACGATGGTCTTACTTGAGACTGTGCAAGgtatg--gttatagttgctcaactttaacctagcata--tagttcaaagtactgaatatgagatgttctgttgcag

upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 22
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtata----ctagtgtaactgtttatttgtaataacac-ttaagt--tggttattgcag
|||||| || ||||| || |||||||| ||||| |||||||| |  ||| |||||||||||||||| ||||| || ||||||||| |  ||||||||||||| |||  |||   ||  | | |  || |        || || | ||| |  ||  | |||   | | |  |  || ||||||
GCAAGCAGTAATGGCTAGTGATTTTGCAATTGCTCAGTTCCGCTTTCTTACAGATTTGCTTCTTGTGCATGGACGGTGGTCATATCTCAGAATATGCAAGgtttaacttttctatatttccgacctaaaaatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcag

upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 23
lower sequence: EFJ31523 (Selaginella moellendorffii), 5'ss of exon 23
GCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgttttgttaactgcaatgtatactagtgtaactgtttatttgtaataacacttaagttggttattgcag
|||||| |||||||||||||||||||| || |||||||| || |  ||| | ||| |||| || || ||||| || ||||||||| | || |||   |||||     || | ||| |    ||||| |  |  | | | |  |    ||      |  | |               
GCAAGCAGTGATGGCCAGCGATTTTGCTATAGCACAGTTTCGATTTCTTACTGATCTGCTCCTGGTGCATGGACGGTGGTCATATATTCGGATAACAAAGgttc---gtatggttca----aatgtctcgttttatcagtcctctaatgctgccgctttcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336296|gb|GR842475.1|GR842475
EST:     CAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAG                         GTTGTGATATACTTCTTTTACAAGAATCTCACTTTCACTCTTACCCAGTTT
genomic: CAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgtt ... gttattgcagGTTGTGATATACTTCTTTTACAAGAATCTCACTTTCACTCTTACCCAGTTT
EST: gi|192301651|gb|FG997607.1|FG997607
EST:     CAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAG                         GTTGTGATATACTTCTTTTACAAGAATCTCACTTTCACTCTTACCCAGTTT
genomic: CAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGgtataatgtt ... gttattgcagGTTGTGATATACTTCTTTTACAAGAATCTCACTTTCACTCTTACCCAGTTT