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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatactttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtttgttttgggcag

Basic information

species Glycine max
transcript GLYMA08G25590.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 21
CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatactttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtttgttttgggcag
      || || ||||| ||||| || |||||||| ||    ||  ||   ||||||||||||||||| ||||| ||||| |||||||||||| | ||||||| | |    |   || ||          | |  | ||   ||  | |  | || || | |     |     || ||||   |   | | ||||  ||     ||  |||
------CTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGGg----tagcacctta---------gcagctctagctatcatgacattttcttatgaagaaaacaca-atgaata--cagttatacttgttattca---tgaacag

upper sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv12s0055g00610.t01 (Vitis vinifera), 5'ss of exon 3
CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatactttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtttgttttgggcag
      || || ||||| ||||| || |||||||| ||    ||  ||   ||||||||||||||||| | ||| ||||| |||||||||||| | ||||||| |||          |||     | || |  | |   |  ||  | |  | || || | |     |     || ||||   |   |   || |  ||  | |   |   
------CTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGTAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGAg----------tttgcaccttagcggctctagct--atcatgacattttcttatgaagaaaacaca-atgaata--cagttatgcttattattcatgtacag---

upper sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 46
CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatactttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtt--tgttt-tgggcag
||||| || || ||||| ||||| || |||||||| ||    ||  ||   ||||||||||||||||| ||||| ||||| |||||||||||| | ||||||| |||                  | ||    |  | |     |||       |  |  ||||||| ||   | ||  || | |  ||| || |||||  | ||  ||  |||
CGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGgtaagag------------------ttagcaccttagca-----gctctagccatcgtgacattttc-ttaagaaaacaaaatgaatacagttatggttgttattcatgaacag

upper sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv12s0055g00580.t01 (Vitis vinifera), 5'ss of exon 21
CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatactttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtt--tgttt-tgggcag
||||| || || ||||| ||||| || |||||||| ||    ||  ||   ||||||||||||||||| ||||| ||||| |||||||||||| | ||||||| |||                  | ||    |  | |     |||       |  |  ||||||| ||   | ||  || | |  ||| || |||||  | ||  ||  |||
CGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGgtaagag------------------ttagcaccttagca-----gctctagctatcgtgacattttc-ttaagaaaacaaaatgaatacagttatggttgttattcatgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5677523|gb|AI938653.1|AI938653
EST:     GCTTGTCTATGAATATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTG                         GAAAATGTTTAACCCTCAATTGGTCCACACGCTATGATATATGCTTGGGTG
genomic: GCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaa ... ttttgggcagGAAAATGTTTAACCCTCAATTGGTCCACACGCTATGATATATGCTTGGGTG