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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAAAGCTATTGTGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattggagtttcatttcctctttccagtcatagactcttccccttcccccattttaaaccattctcagttatattttgtaatttgttgcatcag

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 23
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 21
TGCTGGATTAATTACCATGTTGCATGCTTGCCTAGACATGAAAGCTATTGTGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattggagtttcatttcctctttccagtcatagactcttccccttcccccattttaaaccattctcagttatattttgtaatttgttgcatcag
||||||  || | ||  |||||||||| ||||| ||||||||| | ||| | ||||| |||||||||||||| ||||||||||| |||||||| ||||||||  || || | |||  | ||   |  |   |  |  | |   |    |    |   | | || ||   | |||  | | ||||              
TGCTGGTATAGTGACATTGTTGCATGCATGCCTTGACATGAAATCCATTATACTGGGGAAATATCACTATGTGCTCTACTTCCTTGTTTTGGCGATGCAGgt--gagtgcaattttctgtctgatgactttttttttaatgaactaagtttatctactaacacaata--cggtttgagtgtgtag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31462296|gb|CD404324.1|CD404324
EST:     TGCTGGGAANATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|46492855|gb|CN472411.1|CN472411
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|10237756|gb|BE806644.1|BE806644
EST:     TGCTGGGAAAATATCACTATGTTCTCTTCTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|208173719|gb|GD970326.1|GD970326
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|193490148|gb|FK453719.1|FK453719
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGT
EST: gi|10234169|gb|BE803057.1|BE803057
EST:     TGCTGGGAAAAT-TCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|120492692|gb|EH220859.1|EH220859
EST:     TGCTGGGAAAATATCACTATGCTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|6747639|gb|AW318152.1|AW318152
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|120530034|gb|EH258168.1|EH258168
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|10237376|gb|BE806264.1|BE806264
EST:     GTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: GTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
EST: gi|42722474|gb|CK768373.1|CK768373
EST:     TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAG                         CCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT
genomic: TGCTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGgtttgattgg ... gttgcatcagCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTGTCAGTGCCT