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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgtataaatgttcttagtttgtatcaattcaacagctgaaaaataaatcagtgaaaactagtatggcttcttgtatag

Basic information

species Glycine max
transcript GLYMA06G17940.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 23
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgtataaatgttcttagtttgtatcaattcaacagctgaaaaataaatcagtgaaa--actagtatggcttcttgtatag----------
|||||||| |||||||| ||||| || |||||||| ||||| || ||||| |||||||||||||| || || ||||| || || || || |      ||   | |  | | ||| | |  | | ||  |  |        | |  | | |  || | | |  |   ||| |             
TGGTTTGGCGAGGGTGAGAAATATGTCAAAGCTGTGTTTTCACTTGCAAGCAAAATTGCTCCTAGTGTCATTTTTGTGGATGAGgtcagtcaacaaaattcttatggtcattttttttggaatgaattgtcgtttggcccaccttttatattaccaatgtttcagtttggaccaccatatacct

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 23
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgta--taaatgttctta--gtttgtatcaattcaaca-gctgaaaaataaatcagtgaaaactagtatggcttcttgtatag
||||||||||| || || || |  ||||||||||| ||||| |||||||| ||||||||||| || || || || || || || |||||    |||||  | |    ||  |  |  | | | |||||     | ||     |   |   | |        ||    | ||||||||
TGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtatag

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 23
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 18
TGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagcctt--ttgtataaatgttcttagtttgtatcaattcaacag--ctgaaaaataaatcagtgaaaac--tagtatggct-tcttgtatag------------------------------------------------
||| ||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||| || || || ||||| ||||| |||||   |  | || |     | | |      | || ||| |   |  ||| |  |  |  |    | | |  |||| || |  ||  ||||                                                  
TGGCTTGGTGAAGGAGAAAAATTCGTGAAAGCTGTTTTTTCACTGGCAAGTAAAATTGCTCCAAGTGTAATTTTTGTGGACGAGgtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggacaccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctcatttatcctgctcttgtttttattttttag

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 23
lower sequence: GRMZM2G157621_T02 (Zea mays), 5'ss of exon 22
TGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgtataaatgttcttagtttgtatcaattcaacagctgaaaaataaatcagtgaaaactagtatggcttcttgtatag---
|||||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||| ||||||| || || || || || || || ||   ||| | | || | ||   | |  |||   |   |||  | | || |       |    | |  | ||   || ||||||    
TGGTTTGGAGAGGGAGAAAAATATGTGAAAGCTGTTTTTTCACTTGCAAGCAAAATTTCTCCTAGTGTTATTTTCGTGGATGAGgttagtgattt-tcttaacggtcactgatgatatgcctatgaca--taataagttgtagcttactcattgatttg-tgtcctgtatattag

upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 23
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 22
TGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgtataaatgttctt-agtttgtatcaattcaacagctgaaaaataaatcagtgaaaactagtatggcttcttgtatag
||||||||||||||||| || || || |||||||| |||||  |||| ||||||||  | |||||||| || ||||| ||||| ||||   || ||  ||| |  |    | ||||  |  | |||        | | |    || ||     || ||  | ||  |      
TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgtaatttttctggttaattccttgcgaatttgcttgtaatcagagcactgacagtcttacaatg----ttattactgttttgtag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338257|gb|BI498913.1|BI498913
EST:     TTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAA                         GTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
genomic: TTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttt ... tcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
EST: gi|151404219|gb|EV274029.1|EV274029
EST:     ATTTGTTGACGAA                         GTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
genomic: ATTTGTTGACGAAgtaagccttt ... tcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
EST: gi|27427279|gb|CA938799.1|CA938799
EST:     TTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAA                         GTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
genomic: TTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttt ... tcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
EST: gi|192318122|gb|FK010946.1|FK010946
EST:     TTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAA                         GTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG
genomic: TTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttt ... tcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATG