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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtgggaagtctattgaatctacagaccacctaatggcctttatagctatttgctttttgtggagaattcagatatttgatgcaagtgcactaccaaaataattcctttgaacttggcactaacatgcttgctttagtag

Basic information

species Glycine max
transcript GLYMA06G16110.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 23
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 23
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtgggaagtctattgaatctacagaccacctaatggcctttatagctatttgctttttgtg----gagaattcagatatttgatgcaagtgcactaccaaaataattcctttgaacttggcactaacatgcttgctttagtag
  | ||||| ||  ||||||| ||||| || |||||||||||  | ||||| ||||| || ||||| ||| | |||||||| ||||| ||||| |||||||||            ||||  || || || ||||    || |   || | || | | ||||     |   || |  | |||| || |                                                        
AGTGGACAGAGATGTTCCTGGTGCAGTTCAATATGTCAAGAACACCATTTCTGATCTACTAATGAACCGTGTAGACTTATCTCTTCTAGTTATAACAAAGgtg------------aatccgcacactacttaatacgattgaatcctctgtgttgtctgtgttgtaaatctttaactgtttgttgtacag-----------------------------------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 23
lower sequence: GRMZM2G115245_T01 (Zea mays), 5'ss of exon 7
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtggg-aagtctattgaatctacagaccacctaatggcct-ttatagctatttgctttttgtggagaattcagatatttgatgcaagtgcactaccaaaataattcctttgaacttggcactaacatgcttgctttagtag
| | ||| | ||  ||||||| |||||||| |||||||||||  | || || |||||  | ||||||||| ||||||| || ||||| ||||| ||||||||||| || |  |     | ||      |  | ||    | ||  | || |||    | | ||       |||                                                                    
GGTAGACCGTGATGTTCCTGGTGCAGTCCAATATGTCAAGAACACCATATCTGATCTATTAATGAATCGTGTGGACTTGTCTCTTCTTGTTATAACAAAGgtgggcaaattcaactgttttaagatgaattttatattgtgttgcaactcttttgactgtttgagatgcacag--------------------------------------------------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 23
lower sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 23
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtgggaagtct-attgaatctacagaccacctaatggcctttatagctatttgctttttgtggagaattcagatatttgatgcaagtgcactaccaaaataattcctttgaacttggcactaacatgcttgctttagtag---
 ||||| || ||  |||| |||||||   |  ||||||||||  | ||||| |||||||||||||| ||||| ||||| |||||| |||| ||||| |||||   | || | | |  || ||  | ||   | |||    |     ||    |  | || |   || |  ||  || || |  ||     |||  | || |||    | ||   ||   || |  || || ||  | |     
TATTGATAGAGATGTTCCAGGGGCAGCTGAAAATGTCAAGAAAACCATTTCGGATCTTCTCATGAACCGTATTGACTTGTCACTTTTGGTGATTACTAAGgtaatatgttttacttgatttattgtcc-tgtgatgtttgtatcgcctgaaagtgtattttaatgattaaagccatctgttaaaa-----ctaaaacaagaatcaaatggataatgctcctgatgtgtttcctcaaatcatag

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 23
lower sequence: PP1S54_271V6.1 (Physcomitrella patens), 5'ss of exon 23
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtgggaagtctattgaatctacagaccacctaatggcctttatagctatttgctttttgtggagaattcagatatttgatgcaagtgcactaccaaaat--aattcctttgaacttggcactaacatgcttgctttagtag
 |||||  | || |||||||| || || ||||||||||| ||| |||| || || || ||||||||| | |||||||| || ||||| || || ||||||||| ||    | |  ||| |   |||||  ||         |  | | | ||||| | ||| |   ||  | |  ||| ||  | |   |||      |    ||   || |                             
CATTGATCGTGATATTCCTGGAGCTGTTCAGTATGTCAAAAATACAATCTCTGACCTGCTCATGAATAGAATGGACTTGTCTCTTCTTGTCATCACAAAGgtgagatacatctataattt--cgaccatata--------cacggtt-tgtgcttctcgtgtat--tttggctccttgctggcacttttctattcgttttcggttttctttat----------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 23
lower sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 22
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtgggaagtctattgaatctacagac-cacctaatggcct-ttatagctatttgctttttgtggagaattcagatatttgatgcaagtgcactaccaaaataattcctttgaacttggcactaacatgcttgctttagtag
  ||||  | ||  | ||||| || ||  | ||||| |||      ||||| ||  | || ||||||||||||||  |||||||||| ||||| ||||||||   | ||  || | || |  |     |  | | ||| | ||  ||                                                                                              
TGTTGATCGAGATGTGCCTGGAGCTGTGGACTATGTTAAGGGCATGATTTCGGACTTGCTGATGAATCGTATGGATCTATCACTTCTTGTTATCACAAAGgtatcatgtgaatagtatttgtatctgtatatcacggcttgtttcag----------------------------------------------------------------------------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 23
lower sequence: EFJ15224 (Selaginella moellendorffii), 5'ss of exon 22
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtgggaagtctattgaatctacagac-cacctaatggcct-ttatagctatttgctttttgtggagaattcagatatttgatgcaagtgcactaccaaaataattcctttgaacttggcactaacatgcttgctttagtag
  ||||  | ||  | ||||| || ||  | | ||| |||      ||||| ||  | || ||||||||||||||  |||||||||| ||||| ||||||||   | ||  || | |  |  |     |||| | ||| | ||  ||                                                                                              
TGTTGATCGAGATGTGCCTGGAGCTGTGGACTTTGTTAAGGGCATGATTTCGGACTTGCTGATGAATCGTATGGATCTATCACTTCTTGTTATCACAAAGgtatcatgtgaatagtacttgtatctgtacctcacggcttgtttcag----------------------------------------------------------------------------------------------