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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAAgtatgtatgattttccttttccttttccttttcaaagaaattgttacttgtttttcatatcctaaaaaaaataatgttggcag

Basic information

species Glycine max
transcript GLYMA05G31270.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31270.1 (Glycine max), 5'ss of exon 23
lower sequence: LOC_Os01g73530.1 (Oryza sativa), 5'ss of exon 24
GCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAAgtatgta-tgattttccttttccttttccttttcaaagaaattgttacttgtttttcatatcctaaaaaaaataatgttggcag
|| || |||||||| ||    || ||||||||||| || |||||||||||||||||||||  |  |    ||||  | |||   ||   |    ||   | |   |   ||  || || |||  ||| |  | ||||
GCTCGTTTGTTCTTCCACTGTCCAAAATTTGGTATCCTAGACGAGTGCACCAAgtatgtagcgtatagttttttaatgttctcatttccattttttaccaataaatgcacagctcttataaagcatactcattgcag

upper sequence: GLYMA05G31270.1 (Glycine max), 5'ss of exon 23
lower sequence: LOC_Os05g01700.1 (Oryza sativa), 5'ss of exon 21
GCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAAgtatgt--------atgattttccttttccttttccttttcaaagaaattgttacttgtttttcatatcctaaaaaaaataatgttggcag
|| || ||||| || ||  | || |||||||||||||||||||| ||||| ||||||||        |||| |||  ||  | |||    | |  |     |  | | ||  |   |   |||||||| | |     ||| |||
GCCCGTTTGTTTTTCCACCATCCTAAATTTGGTATTCTTGACGAATGCACGAAgtatgtgctgagccatgactttgattgacatttcttctctttatttgctgataaattagtg--cggttcctaaaagatacttcattg-cag

upper sequence: GLYMA05G31270.1 (Glycine max), 5'ss of exon 23
lower sequence: PP1S150_142V6.1 (Physcomitrella patens), 5'ss of exon 25
GCACGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAAgtatgtatgattttcc-ttttccttttccttttcaaagaaattgttacttgtttttcatatcctaaaaaaaata-----atgttggcag-----------
|||||  | ||||| ||| | ||||| ||||| |||||||||||||||||||||||  |   ||  ||| |||| || ||   |  | |  |||||  |  |||  |   | | | | |   || |      |||||  |             
GCACGACTATTCTTCCATCATCCCAAGTTTGGAATTCTTGACGAGTGCACCAAgtaaattccatcatccatttttctatttaatcaccacaaaattactttttgcatggaaaaacattattgaattctgcgtatgttttctcatgcggttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053550|gb|BM732217.1|BM732217
EST:     CGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAA                         TGCAACTAGTGTTGATGTTGAAGAACACCTATATGGGCTTGCAAAAGATAT
genomic: CGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAAgtatgtatga ... atgttggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATATGGGCTTGCAAAAGATAT
EST: gi|10709930|gb|BF009654.1|BF009654
EST:     CGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAA                         TGCAACTAGTGTTGATGTTGAATAACACCTATATGGGCTTGCAAAAGATAT
genomic: CGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAAgtatgtatga ... atgttggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATATGGGCTTGCAAAAGATAT
EST: gi|9565283|gb|BE474792.1|BE474792
EST:     CGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAA                         TGCAACTAGTGNTGATGTTGAAGAACACCTATATGGGCTTGCAAAAGATAT
genomic: CGCTTGTTCTTTCATAAGCCCAAATTTGGTATTCTTGACGAGTGCACCAAgtatgtatga ... atgttggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATATGGGCTTGCAAAAGATAT