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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGgtaagcttgctcttctgaataacattgattaaatctgcttttgcttggatgtgcaaaattcaagtgaacattgttgatagaggatatggtatgcaggttg...

Basic information

species Glycine max
transcript GLYMA03G37450.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37450.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 21
CCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGgtaagcttgctcttctgaataacattgattaa--atctgcttttgcttggatgtgcaaaattc-aagtgaacattgttgatagaggatatggtatgcaggttg
|||||||||||||||||| || |  | ||| |||| |||||||| |     ||||||||||| ||||||||||| | ||||||||| |||||||||| ||||||  ||  | | |  ||||| |     | |  || |  | | | |||  | ||  | ||   || || |  || |   |    | | |  | |     |  
CCAGGTTTAGAAAGTTGGAAAACTAACAAAGTTGCCTCTTGGCATAGCCATGAAGGGCACTCTATCCAATGGTTGTGTGTAGTATGCATAGACCGAAGAGgtaattttattttacc-aataaaacatgctgactattttttatggtttgtttctgagagatcagaaatggattttttctttctttgttcttctctctctct--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406442|gb|EV276257.1|EV276257
EST:     GAAAGGGCACTCCACCCAATGGTTATCTGTAGTATGTATAGACCGAAAAG                         GCATGATGGCTGAG-TCACTACAGCATTGGCCACT
genomic: GAA-GGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGgtaagcttgc ... attattgcagGCATGATGGCTGAGGTCACTACAGCATTGGCCACT
EST: gi|31472742|gb|CD414770.1|CD414770
EST:     GGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAG                         GCATGATGGCTGAGGTCACTACAGCATTGGCCACTGCAGGCATAGCCATAT
genomic: GGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGgtaagcttgc ... attattgcagGCATGATGGCTGAGGTCACTACAGCATTGGCCACTGCAGGCATAGCCATAT