Sequence
atgc intronic sequence ATGC exonic sequenceAAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTgtaagttaccttttagacattttgttactgttgctctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcgaatttccttcatttggattag
Basic information
species | Glycine max |
transcript | GLYMA03G03120.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 23
lower sequence: AT1G71820.1 (Arabidopsis thaliana), 5'ss of exon 23
AAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTgtaagttaccttttagacattttgttactgttgctctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcgaatttccttcatttggattag
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AAAAACTACATCAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAAGAGGTTCTCATGGATTTCTTTAGGGAGTATATAAGTGCATCTgtaagttgg--tttcagcacttaactcatttttaacctgaataattttat-atttctttgaagtattgcttaatatt--tccactggaactgtgttacag--------------------------
upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 23
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 22
AAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTgtaagt--taccttttagacattttgttact-gttgctctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcga-atttccttcattt--ggattag--
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AGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGTTAGACGAAGAGGTTATCTTGGATTTCTTTAGGGAGTACATAAGTGTCTCCgtaagtgccaccaccttgacttaagtttactcgaaatacagttacctcaacattttttctagtataattttcttgatgtattcatctgctatgcttcttacttcctccatatttccttgacttatgtgttacag
upper sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 23
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 22
AAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTgtaagt--taccttttagacattttgttactgttgct-ctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcga-atttccttcattt--ggattag--
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AGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGCTAGATGAAGAGGTTATCTTGGATTTCTTTAGGGAGTACATAAGTGTCTCCgtaagtgccaccaccttgacttaagtttactagaaatacagttacctcaatattttttctagtgtaattttcttgatctattcatctgcaatgcttcttacttcctccacatttccttgacttatgtgttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398921|gb|EV268792.1|EV268792EST: TAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCT AAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCA
genomic: TAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTgtaagttacc ... tttggattagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAATTACATTAAGGAAGAAACTATTGAACGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTgtaagttaccttttagacattttgttactgttgctctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcgaatttccttcatttggattag
- - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA