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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttgagtcctaagattttctgtttttcatttttaacctgttgtgtgtgtggcaataaatcatgttttgtgtatgtgcatgcaacttttcag

Basic information

species Glycine max
transcript GLYMA20G28200.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 22
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 22
CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttgagtcctaagattttctgtttt--tcatttttaacctgttgtgtgtgtggcaataaatcatgttttgtgtatgtgcatgcaacttttcag-
 ||||||| || || || | ||| || || || |||||||| |||||||||||  ||||||||||| ||||||||||||| ||||||| ||  ||    |   || ||  |    |      |  || ||   ||    | | |   | | | |       | |||  |     | |  | ||||| 
TTGAGAGGCTTCGAGTTTGCAAAGGCTGTGACATTGGTGCTGGAACCATTTACTCTGGAAAATGGCTTGTTGACTCCGACGTTCAAGgtaaatttcttatatgaatatacttcactcaaactagcttcaaaaggtaaattctatcttagttagtggaaaggtttgttcgacatggtatatgttcaga

upper sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 22
CTGAGAGGTTTTGAATTCGTAAAAGCGGTCACTTTGGTGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttgagtcctaagattttctgtttttcatttttaacctgttgtgtgtg-tggcaataaatca-tgttttgtgtatgtgcatgcaacttttcag
 |||||||||||||||| |  ||||| || ||||||||||| |||||||||||  |||| ||||  ||| | ||||| ||||||||||||||  || | |   || || |       |  |     | |        |    |||||     | | ||  || | |   | ||||     || |||
TTGAGAGGTTTTGAATTTGCCAAAGCTGTGACTTTGGTGCTTGAACCATTTACCATGGACAATGATCTGCTTACTCCAACATTCAAGgcaagtgttcaatttaaaaatctgagaaaataaaaccagagcagacacaataaaatggcaggctcttactgcattatcttctttcatgt--tcttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231873|gb|BE800761.1|BE800761
EST:     TGCTCGAACCATNTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAA                         GTTAAGAAGCCTCAAGCGAAGGAAATATT-CGCAAAA
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAA-TATTTCGCAAAA
EST: gi|9984323|gb|BE658431.1|BE658431
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|6482302|gb|AW201571.1|AW201571
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|6724335|gb|AW308734.1|AW308734
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|8286445|gb|BE024013.1|BE024013
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|12691086|gb|BG157422.1|BG157422
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGC-AAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|21479843|gb|BQ576526.1|BQ576526
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|22928570|gb|BU545709.1|BU545709
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|21676461|gb|BQ628812.1|BQ628812
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|5761162|gb|AI966525.1|AI966525
EST:     GCTCGTAACCATTTACGTGGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: GCTCG-AACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|21594959|gb|BQ610322.1|BQ610322
EST:     GAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: GAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|208299583|gb|GE097122.1|GE097122
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|208296976|gb|GE096572.1|GE096572
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|21993972|gb|BQ785500.1|BQ785500
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAATATCTGATATG
EST: gi|213596223|gb|DB981811.1|DB981811
EST:     GCCTGTTGACTCCGACATTCAAG                         GTTTGGAGGCAACAAGCGAAGGAATATTTCGCAAAAGCAACGA-ATGATAT
genomic: GCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAATATTTCGCAAAAGCAA-TATCTGATAT
EST: gi|6481851|gb|AW201122.1|AW201122
EST:     TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAG                         GTTAAGAGGCCTCAAGCGAAGGAA
genomic: TGCTCGAACCATTTACGTTGGAAAATGGCCTGTTGACTCCGACATTCAAGgcaagctttg ... aacttttcagGTTAAGAGGCCTCAAGCGAAGGAA