Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGAACCCAAATTCCAAAGTGATAATTCCCGATGCATATGGTGTGTCTTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAGgtactttacgttgactacttattgtttcttcatctttccttgcttaatatctgatccttatatctgctattccag

Basic information

species Glycine max
transcript GLYMA20G25120.1
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491972|gb|EH220139.1|EH220139
EST:     TTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAG                         GCTATTTTGTGGTTGACCGGGACTCGACATCAGAAAAACTTGTTTTTAATA
genomic: TTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAGgtactttacg ... gctattccagGCTATTTTGTGGTTGACCGGGACTCGACATCAGAAAAACTTGTTTTTAATA
EST: gi|14991826|gb|BI317499.1|BI317499
EST:     TTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAG                         GCTATTTTGTGGTTGACCGGGACTCGACATCAGAAAAACTTGTTTTTAATA
genomic: TTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAGgtactttacg ... gctattccagGCTATTTTGTGGTTGACCGGGACTCGACATCAGAAAAACTTGTTTTTAATA
EST: gi|7685172|gb|AW755820.1|AW755820
EST:     TTCCATACAGAATGCAAAAGTTTGGGACAATTTCCAATTAGAAAGATTAT                         GCTATTTTGTGGTTGACCGAGACTCGACATCAGAAAA-CTTG
genomic: TTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAGgtactttacg ... gctattccagGCTATTTTGTGGTTGACCGGGACTCGACATCAGAAAAACTTG
EST: gi|21601019|gb|BQ611350.1|BQ611350
EST:     TTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAG                         GCTATTTTGTGGTTGACCGGGACTCGACATCAGAAAAACTTGTTTTTAATA
genomic: TTCCATACAGAATGCAAAAGTTGGGGACAATTTCCAATTTGAAAGATTAGgtactttacg ... gctattccagGCTATTTTGTGGTTGACCGGGACTCGACATCAGAAAAACTTGTTTTTAATA