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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAATGGTTATAGAAACAACTCAGTATCAGGAGCTGGAGGGACATTCCTGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatactgtagctggacataactgttattatgttgcattgtactgcttgtcatgtccttgacatgcaactttttatcaatcaactctggctcacatg...

Basic information

species Glycine max
transcript GLYMA19G40520.1
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990753|gb|BI316426.1|BI316426
EST:     TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAG                         GAGTATGCTTTCTCACCTCCAGCACATGCAATAGAGCTTGGAGCAGGGGAG
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAG
EST: gi|193349055|gb|FK317389.1|FK317389
EST:     TGTTTGACAACTTGTTTCCTGGAATGCTTTATTTGCGTCCTGTTTTGAAG                         GAGTATGCTTTCTCACCTCCAG
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAG
EST: gi|15815183|gb|BI787458.1|BI787458
EST:     TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAG                         GAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAG
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAG
EST: gi|22931640|gb|BU548779.1|BU548779
EST:     TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAG                         GAGTATGCTTTCTCACCTCCAGCACAGGNNNTAGAGCTTGGAGCAGGGGAG
genomic: TGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatact ... tatttcctagGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACAATGGTTATAGAAACAACTCAGTATCAGGAGCTGGAGGGACATTCCTGTTTGACAATTTGTTTCCTGGAATGTTTTATTTGCGTCCTGTTTTGAAGgtactatactgtagctggacataactgttattatgttgcattgtactgcttgtcatgtccttgacatgcaactttttatcaatcaactctggctcacatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG