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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCGCAAGAAGGATAAGCTTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGGtatattttatcttataaacattatttagctcctttcctcaacttgtttgatataaataactcaagttttagtaataatacagg

Basic information

species Glycine max
transcript GLYMA18G06770.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os03g18310.2 (Oryza sativa), 5'ss of exon 19
-TCGCGCAAGAAGGATAAGCTTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGGtatattttatct---tataaacattattt----agctcctttcctcaacttgtttgatataaataac-tcaagttttagtaataatacagg
 || || |  ||||| ||||| ||||||||||||||| | || || || ||| | ||||||||||||||||  |||    ||   |  ||  || |  |    |  |   || |  || |    |  | ||| ||   ||         ||    ||||| 
ATCACGTAGCAAGGACAAGCTGAGGTATCGTTATCCTAGAGGAGAATCCTACCTCGATGTCATTCAAAGgttaattcaggctatgtgaaattatcacatgcagacatatattacgtaattcacctattgtaactattatcggtgcactttatctttacag-

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 19
-TCGCGCAAGAAGGATAAGCTTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGGtatattttatct---tataaacattattt----agctcctttcctcaacttgtttgatataaataactcaagttttagtaataat-acagg-------------
 || || |  ||||| ||||| ||||||||||||||| | || || || ||| | ||||||||||||||||  |||    ||   |  ||  || |  |    |  |   || |  || |    |  | ||| ||      ||     | ||  | ||||              
ATCACGTAGCAAGGACAAGCTGAGGTATCGTTATCCTAGAGGAGAATCCTACCTCGATGTCATTCAAAGgttaattcaggctatgtgaaattatcacatgcagacatatattacgtaattcacctattgtaactattatcggtgcactttatctttacagtcttctctgttcag

upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 22
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 19
-TCGCGCAAGAAGGATAAGCTTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGGtatat------------------tttatcttataaacattatttagctcctttcctcaacttgtttgatataaataactcaagttttagtaataat-acagg----------
  | ||||||   ||||| ||  |||| ||||||||||| ||||| || || ||||| ||||||||||||||  |                  ||||  |   |||||||| | |     | |||| | || |||   |  |     |  |   | |  | || |  |  ||          
AGCACGCAAGGCAGATAAACTCCGGTACCGTTATCCTCGCGGTGAATCTTATTTGGACGTCATTCAAAGgtaagtctatgaactgcaattaaatttagataggaaacattagtgatgctttctcctgagctggtt-attgcacgccccgtagtatctgatgattaccatgggcttcctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669465|gb|BE190572.1|BE190572
EST:     TTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGG                         TTAGAACCTGTAATTATAGAGCTTGAGCGACAACGAGCACCTGTTGTTGTG
genomic: TTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGGtatattttat ... ataatacaggTTAGAACCTGTAATTATAGAGCTTGAGCGACAACGAGCACCTGTTGTTGTG
EST: gi|31305977|gb|CD391180.1|CD391180
EST:     TTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGG                         TTAGAACCTGTAATTATAGAGCTTGAGCGACAACGAGCACCTGTTGTTGTG
genomic: TTAGGTATCGTTATCCTCGGGGTGAGTCATACTTGGATGTCATTCAAAGGtatattttat ... ataatacaggTTAGAACCTGTAATTATAGAGCTTGAGCGACAACGAGCACCTGTTGTTGTG