Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCATGCCAAGCTACAATGGAATCTTGACTATCAGTTGTATCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtaccttgtcattgagattcaaactgctgttcaaaggttggcatgaagatacttaatgcttcagctttaatacag

Basic information

species Glycine max
transcript GLYMA17G13080.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13080.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 22
TCTCATGCCAAGCTACAATGGAATCTTGACTATCAGTTGTATCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtaccttgtcattgagattcaaactgctgttcaaaggttggcatgaagatactt-----aatgcttcagctttaatacag-----------------------------------------------------
 || |||||||| |||||||| || ||||| ||||| || ||||| || ||||| |||||||  || |||||||| || || || ||||||||||||   |  |  | |   |||| |   || ||| ||  ||    |    ||  ||     | |  |||   |  ||||  |                                                     
GCTGATGCCAAGTTACAATGGGATATTGACAATCAGCTGCATCCGAACCTTGACACAGATTGGGTTGAAGCTTTCTGGATTTATCCCTCTTgtaagtgtgt--ttgtggtctttcatatcccttttctaaaatttattttccaatgtttttgcaattatttcttgtccaataatggactgttcttgggcttattgtcattcttaagttgtgtttggtacttgcggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23052735|gb|BU577226.1|BU577226
EST:     TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT                         GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: gi|5058335|gb|AI736811.1|AI736811
EST:     TCCCGACATTGACCCAAATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT                         GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: gi|8283658|gb|BE021217.1|BE021217
EST:     TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT                         GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: gi|9565778|gb|BE475287.1|BE475287
EST:     TTTCAGGGTTCATTCCTCTT                         GATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
genomic: TTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTATGGACTTGTAAAGCCTTTTCGGGACATAAAGGCATTGTGG
EST: gi|18041385|gb|BM309679.1|BM309679
EST:     TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTT                         GATCGAGTTTAT
genomic: TCCGGACATTGACCCAGATTGCATTAAAGCTTTCAGGGTTCATTCCTCTTgtaagtacct ... tttaatacagGATCGAGTTTAT