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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGGAAAAGAGCCTTAAAGCCACTTGTGAGGAGTTCATCATGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgtttgtctgtaaacaagttatttgttactttgccagctggtgaaccaaaaacagatccttggctttaaagcaaaggcacttgtaaatatatatggttctt...

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 22
lower sequence: AT1G73430.1 (Arabidopsis thaliana), 5'ss of exon 22
GAGCTGGAAAAGAGCCTTAAAGCCACTTGTGAGGAGTTCATCATGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgt---ttgtctgtaaacaagttatttgttactttgccagctggtgaaccaaaaacagatccttggctttaaagcaaaggcacttgtaaatatatatggttctt
|| ||||||||  | |||||  | |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| || || |||||   |||    |   |   |||| ||  |          |            | |||| || ||| |    | ||| |     || |  || | | |  |  
GAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGgtgggttgctcctttcctttttatctgagaaaaatgtttttcacagttttgtta-agattctaggcgtcctcgaaaaagtttaagtcagcatcttttgcac--

upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 23
GAGCTGGAAAAGAGCCTTAAAGCCACTTGTGAGGAGTTCATCATGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgtttgtctgtaaacaagttatttgttactttgccagctggtgaaccaaaaacagatccttggctttaaagcaaaggcacttgtaaatat-atatggttctt--
|| ||||| || ||||| |||||||||||||||||||| || ||||| || |||||||| |||||||||||  |||||||||| ||||| |||||||||          ||   |  | |  ||   |   ||  | |       |  |  |   ||   ||  |  |  | ||  |||| | | |       |  
GAACTGGAGAAAAGCCTCAAAGCCACTTGTGAGGAGTTTATTATGTCGGTCACTAAGCTAGTTGTGGATCCCATGCTTTCATTTGTTACTAAGgtttgttctc---tttgtctatcatcatatttttaaagggaaatcagttcttatgtgatactctcagaaaaactgtaatttagaaatttcagaaaacaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722258|gb|BW662403.1|BW662403
EST:     TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAG                         GTTACAGCAGTTAAAGTTGCATTATCATCAGGTGGTCAGAATCAAAAGCTA
genomic: TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgtttgtctgt ... gttttcgtagGTTACAGCAGTTAAAGTTGCATTATCATCAGGTGGTCAGAATCAAAAGCTA
EST: gi|22931215|gb|BU548354.1|BU548354
EST:     TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAG                         GTTACAGCAGTTAAAGTTGCATTATCATCAGGTGGTCAGAATCAAAAGCTA
genomic: TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgtttgtctgt ... gttttcgtagGTTACAGCAGTTAAAGTTGCATTATCATCAGGTGGTCAGAATCAAAAGCTA
EST: gi|207709099|gb|GD690557.1|GD690557
EST:     TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAG                         GTTACAGCAGTTAAAGTTGCATTATCAT
genomic: TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgtttgtctgt ... gttttcgtagGTTACAGCAGTTAAAGTTGCATTATCAT
EST: gi|254339788|gb|GR857913.1|GR857913
EST:     TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAG                         GTTACAGCAGTTAAAGTTGCATTATCATCAGGTGGTCAGAATCAAAAGCTA
genomic: TGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgtttgtctgt ... gttttcgtagGTTACAGCAGTTAAAGTTGCATTATCATCAGGTGGTCAGAATCAAAAGCTA