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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGAGCTCAAATAAAACCTCACATACCTTTGCTAAATGACCGGATATATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAGgtatattaatatttcatttccttctactaaaaatgaatcaaatagtttatgttagagattcgctttctcaatcctatgaataataagttgcatgtaagtt...

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30190.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv16s0050g00490.t01 (Vitis vinifera), 5'ss of exon 22
AGATGGAGCTCAAATAAAACCTCACATACCTTTGCTAAATGACCGGATATATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAGgtatattaatatttcatttccttctactaaaaatgaatcaaa--tagtttatgttagagattcgctttctcaatcctatgaataataagttgcatgtaagtt-
|||||||||| ||||||||||||| || || || || ||  | || ||||| || |||||||||||||||||||||||||||||||| ||  |||| ||||||  |   | ||| |||| |   ||||| |      |  ||     ||  | ||    | |   |||  || | || |   |  | |   | |  |  ||| 
AGATGGAGCTGAAATAAAACCTCAAATTCCATTACTTAACAATCGCATATACGATACTAAATTTGAGTCTCAATTTTATATGATTTCAGATGCAAACAAGgtactt--gtcttttatttacccttactatatggatgttgaaaccctttccttttcttaactttgttttgcattact-tcttttttgataggtaactttgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666526|gb|AW277920.1|AW277920
EST:     ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCACATAAG                         CGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA
genomic: ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAGgtatattaat ... ctgattatagCGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA
EST: gi|15813512|gb|BI785787.1|BI785787
EST:     ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAG                         CGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA
genomic: ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAGgtatattaat ... ctgattatagCGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA
EST: gi|19453651|gb|BM955061.1|BM955061
EST:     ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAG                         CGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA
genomic: ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAGgtatattaat ... ctgattatagCGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA
EST: gi|254334421|gb|GR844206.1|GR844206
EST:     ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAG                         CGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA
genomic: ATGACACTAAATTTGAGTCTCAATTTTATATGATTTCTGACTCAAATAAGgtatattaat ... ctgattatagCGCGTATATTCAAGTGGAGATGTCTATCCAAGCTCTTCTAATCTTCCCAAA