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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGGGTTGCGACTGAAGCGTGACATTACTGAATATGGAGAATTTCTGCGTAGTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCATgtaagtttaacaacatgcaaatcttttcaaattttttcctgtctcccagtttttacatactaatttcttaacactttctatag

Basic information

species Glycine max
transcript GLYMA16G01660.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01660.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 22
TGGGGGGTTGCGACTGAAGCGTGACATTACTGAATATGGAGAATTTCTGCGTAGTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCATgtaagtttaacaacatgcaaatcttttcaaattttttcctgtctcccagtttttacatactaatttc-ttaacactttctatag-------
||| ||  ||||| |||||||||| || || || ||||| |||||| |||| ||||| ||||||||  | || ||||| || |||||||| ||||||||||||||||   ||  |    |   | ||| || |||     | |  || | || | |  || | |     |||   |  | | |       
TGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcggaagtttttgaatatctcagatctttc---atttagcattcttaaaaatctcactctaccaacgactctttttgtctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208096737|gb|GD892934.1|GD892934
EST:     CGTAGTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCAT                         AGTGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
genomic: CGTAGTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCATgtaagtttaa ... ctttctatagAATGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
EST: gi|208307763|gb|GE105845.1|GE105845
EST:     TTTCAATGCTCCGTTCTGTTGATGAAAAGTTTGAATTATTGGGCAT                         AATGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
genomic: TTTCAATGCTCCG-TCTGTTGATGAAAAGTTTGAATTATTGGGCATgtaagtttaa ... ctttctatagAATGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
EST: gi|27427036|gb|CA938556.1|CA938556
EST:     CGTAGTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCAT                         AATGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
genomic: CGTAGTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCATgtaagtttaa ... ctttctatagAATGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
EST: gi|10846431|gb|BF069328.1|BF069328
EST:     GTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCAT                         AATGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
genomic: GTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCATgtaagtttaa ... ctttctatagAATGGCCAATGTATTTATTGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA