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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGGAACATCCATTCGTCATGGTTGTAGTAGCGTTGTAAATCTTGAACTCCTTCCTCAGCCACCACCAACTAGGGCTCCCAGCAATCCATGGCCTCAGgttagatttgaatcattagttttgaaagtctctgttatgtatcttcttagcaatagacaacccgagagaacttggagacttgtaattactagtaatggctcaacaatttatttcatagtaattgttcttgacttgagtggttgagtttaaccaaatgtttctggaatgcag

Basic information

species Glycine max
transcript GLYMA14G32500.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G32500.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 21
CATAGGAACATCCATTCGTCATGGTTGTAGTAGCGTTGTAAATCTTGAACTCCTTCCTCAGCCACCACCAACTAGGGCTCCCAGCAATCCATGGCCTCAGgttagatttgaatcattagttttgaaagtctctgttatgtatcttcttagcaatagacaacccgagagaacttggagacttgtaattactagtaatggctcaacaatttatttca--tagtaat--------tgttctt-----gacttgagtggttgag----tttaaccaaatg-tttctggaatgcag
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CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctcc-ctctccctgttcacgttgctaaaatgctcttct--acttt-aaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag