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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACTAGGCAAAGAACATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGgtgaggttgttctcttgcacagcctaatgtgcacactggttgtttagtacatattgtttctgtgtgacaatagttcttcaaactagatgaagcagtaatt...

Basic information

species Glycine max
transcript GLYMA12G07890.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 22
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 21
TGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACTAGGCAAAGAACATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGgtgaggttgttctcttgcacagcctaatgtgcacactggttgtttagtacatattgtttc-tgtgtgacaatagttcttcaaactagatgaagcagtaatt
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TGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGGCAAAAGACATTTGCCAACATTCTTCACAAAGATCTTAAATTTCCATCAAGTATATCGgtgagatcttctacatatgttgtcatttttttttcctttttatttcacttccagtaattcatatgaatcaaatgcccttgacattctttcatcttaaaat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337410|gb|CO981276.1|CO981276
EST:     CATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAG                         GTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGAACAGAGATCCC
genomic: CATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGgtgaggttgt ... aatgatgcagGTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGAACAGAGATCCC
EST: gi|151393210|gb|EV263085.1|EV263085
EST:     CATTTACAAATATTCTCCACAAGGACCTTAAATCTCCCAAAAGTAAACAG                         GTAAGTTTCAGTGCAAGGCAGTTAATGTACCGGTTGTTGAACAGAGATCCC
genomic: CATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGgtgaggttgt ... aatgatgcagGTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGAACAGAGATCCC
EST: gi|31475124|gb|CD417152.1|CD417152
EST:     CATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAG                         GTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGAACAGAGATCCC
genomic: CATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGgtgaggttgt ... aatgatgcagGTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGAACAGAGATCCC