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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGACACAAATGAACGACGAGAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattattgtacattacttgtattttacctttgaatatcagtatgaatgttagtataccatattcttcctttattatgtagcaattcgaaacataagtattgtatgacctcgaggcaatgtggattttaactttttatgttggatttgtcatttgtcatacag

Basic information

species Glycine max
transcript GLYMA11G09480.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 21
AGGGACACAAATGAACGACGAGAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattattgtacattacttgtattttacctttgaatatcagtatgaatgttagtataccatattcttcctttat-tatgtagcaattcgaaacataagtattgtatgacctcgaggcaatgtggattttaactttttatgttggatttgtcatttgtcatacag
 || || |||||||| || || ||||||||||||||| | || || |||||| |||||||||||||||| ||||||| |||||||  ||| || |||||||||||||  |  || ||||| |   ||   |      | | | |   ||          | ||| | |||  ||  |  |||   |||    |||  || |   ||                                                          
TGGCACTCAAATGAATGAAGAAAGTTCAAGATCTCATTTGATTCTTTCAATTATCATTGAAAGTACCAATCTTCAAACCCAATCAGTTGCCAGAGGAAAGgtattatctt-tatcacttggagcatattctcttgggttaatttctttgacctcccctgagattttgcctaaatacacttagt--ttc----cattggtttgaaatt---------------------------------------------------------

upper sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 22
lower sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 23
AGGGACACAAATGAACGACGAGAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgt--attattgtacattact-tgtattttacctttgaatatcagtatgaatgttagtataccatattcttcctttattatgtagcaattcgaaacataagtattgtatgacctcgaggcaatgt--ggattttaactttttatgttggat-ttgtcatttgtcatacag
 || || |||||||| |  ||||||||| | || |||||||||||||||||  | ||||| |||||||| || |||||||||         | ||| |||||  | | ||||   | | |   ||  ||  |||||    |   ||   | |  | |   |  | || |   ||    | || |  | |      | || | || | | || ||     ||| |    || || |  |||| |  |  || ||  | | |    | |||
CGGCACTCAAATGAATGCTGAGAGTTCACGGTCGCATCTCATACTATCAATAATAATTGAGAGTACCAATCTGCAAAGCCAAGTGCTAATGAAGGGCAAGgtgaactgttgtttctgattgcttacgtttactttggccttatttaacgaagccatttccctgt-ttttatattggcaaggtggtcagttcttcgaaaaatgtttttttacttccttataatctctaaatgtttatattttttactctatgtttccgtatcctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10256321|gb|BE824087.1|BE824087
EST:     AATCAACTGCAAGGGGAAAG                         TTAAGTTTTGTGGATCNNNNNNGCNCAGAAAGAGTAAAAAAGNNNGGTTCT
genomic: AATCAACTGCAAGGGGAAAGgtattattgt ... tgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
EST: gi|58014931|gb|CX701673.1|CX701673
EST:     TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAG                         TTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
genomic: TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattattgt ... tgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
EST: gi|58022523|gb|CX709264.1|CX709264
EST:     TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAG                         TTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT
genomic: TTGTCATTGAAAGTACCAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattattgt ... tgtcatacagTTAAGTTTTGTGGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCTGGTTCT