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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGAGGTTTTGAATTCGTAAAAGCTGTCACTTTAGTGCTCGAACCATTTACGTTGGAAAATGGTCTGTTGACTCCGACATTCAAGgcaagctttgagtcttaagatgatctgtttttcatttttaacctgcagtgtggcaataaatcatcttttgtgtatgtgcatgcaacttttcag

Basic information

species Glycine max
transcript GLYMA10G39540.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 22
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 22
CTTAGAGGTTTTGAATTCGTAAAAGCTGTCACTTTAGTGCTCGAACCATTTACGTTGGAAAATGGTCTGTTGACTCCGACATTCAAGgcaagctttgagtcttaagatgatctgtttt--tcatttttaacctgcag----tgtggcaataaatcatcttttgtgtatgtgcatgcaacttttcag-
 | ||||| || || || | ||| ||||| || || ||||| |||||||||||  ||||||||||  ||||||||||||| ||||||| ||  ||    | | || ||  |    |      |  || ||   | |     | |   | | | |       | |||  |     | |  | ||||| 
TTGAGAGGCTTCGAGTTTGCAAAGGCTGTGACATTGGTGCTGGAACCATTTACTCTGGAAAATGGCTTGTTGACTCCGACGTTCAAGgtaaatttcttatatgaatatacttcactcaaactagcttcaaaaggtaaattctatcttagttagtggaaaggtttgttcgacatggtatatgttcaga

upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 22
CTTAGAGGTTTTGAATTCGTAAAAGCTGTCACTTTAGTGCTCGAACCATTTACGTTGGAAAATGGTCTGTTGACTCCGACATTCAAGgcaagctttgagtcttaagatgatctgtttttcatttttaacc--tgcagtgtggcaataaatcatcttttgtgtatgtgcatgcaactttt--cag
 | |||||||||||||| |  |||||||| ||||| ||||| |||||||||||  |||| |||| |||| | ||||| ||||||||||||||  || | | | || ||         |  |     | |     || |        |     |   |    ||| | | | ||  || |  |||
TTGAGAGGTTTTGAATTTGCCAAAGCTGTGACTTTGGTGCTTGAACCATTTACCATGGACAATGATCTGCTTACTCCAACATTCAAGgcaagtgttcaatttaaaaatctgagaaaataaaaccagagcagacacaataaaatggcaggctcttactgcattatcttctttcatgttcttccag