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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcataactgttgcctttgaatgtctcctagacactatcttaaccaatacacttttcctataatttaaatctaattttttgaatatggttattggt...

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os04g14654.1 (Oryza sativa), 5'ss of exon 22
AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcataactgttgcctttgaatgtctcctagacactatcttaaccaatacacttttcctataatttaaatctaattttttgaatatggttattggt--
       | ||||   ||| || ||||  | ||||||||| |||| || ||||| |||||||||||| |||| ||||||||  |  || ||||||| |    |  |       |||  |||| |  ||||   | || | |     ||| ||   |   ||  ||     || ||     || | |  |||     
------GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTTGCAGAGATTGCTGCTCTTCGATTCCTTAGTTCTCAGgtatcctttgccaaaataattt--atgtgttttagatgttctcctcaaatcgacagttcgacaccaagatattgtcaagttgggatattttgaaattcacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303192|gb|FG997768.1|FG997768
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|192334522|gb|FK024481.1|FK024481
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|192301842|gb|FG997700.1|FG997700
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|213605266|gb|DB978740.1|DB978740
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|120493752|gb|EH221919.1|EH221919
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|120493838|gb|EH222005.1|EH222005
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACGAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|208204532|gb|GE006497.1|GE006497
EST:     GGGCGTTACCTTTGCAGAGATTTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGCGTTACCTTTGCAGAGA-TTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|208086974|gb|GD883340.1|GD883340
EST:     GGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTT-ATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|208031379|gb|GD830327.1|GD830327
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|208275482|gb|GE078186.1|GE078186
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTAGAATTATTGCAACAACAAAAATAGTCAATG
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTT-GA-TTATTGCAACAACAAAAATAGTCAATG
EST: gi|193635447|gb|FK582574.1|FK582574
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
EST: gi|192303193|gb|FG997769.1|FG997769
EST:     GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG                         GAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC
genomic: GGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGgtgtgtcata ... tactttgcagGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGC