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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGGAGGAAGGAAATGATGGTCAAAGGATGTTCAGTTATGAGCAATTAAAGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttgttttgtactgatctaatatttaatttaatattatattaattttattttgaaatatctcttgaaattttgacaatcgccacccctttaatt...

Basic information

species Glycine max
transcript GLYMA10G21350.1
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734486|gb|BM528211.1|BM528211
EST:     AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAG                         GCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
genomic: AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttg ... tgtcggtcagGCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
EST: gi|9903126|gb|BE612094.1|BE612094
EST:     AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAG                         GCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
genomic: AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttg ... tgtcggtcagGCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
EST: gi|193526853|gb|FK487165.1|FK487165
EST:     AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAG                         GCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
genomic: AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttg ... tgtcggtcagGCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
EST: gi|151406200|gb|EV276015.1|EV276015
EST:     AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAGACGGAGAGAG                         GCCTATCTGTC
genomic: AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttg ... tgtcggtcagGCCTATCTGTC
EST: gi|5760830|gb|AI966193.1|AI966193
EST:     AGACTANATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAG                         GCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
genomic: AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttg ... tgtcggtcagGCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
EST: gi|208167861|gb|GD959997.1|GD959997
EST:     AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAG                         GCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
genomic: AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttg ... tgtcggtcagGCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
EST: gi|192326285|gb|FK017632.1|FK017632
EST:     AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAG                         GCCTACCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA
genomic: AGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttg ... tgtcggtcagGCCTATCTGTCAGAGGATGAGTTCAACACTGTATTTGGAATGGCAAAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCGGAGGAAGGAAATGATGGTCAAAGGATGTTCAGTTATGAGCAATTAAAGACTAAATCTGGTCATAATGTGCCTGGAGTTGATCTTAAACGGAGAGAGgttagtcttgttttgtactgatctaatatttaatttaatattatattaattttattttgaaatatctcttgaaattttgacaatcgccacccctttaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacccc