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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgatatgtgtgtatgagggtgtatctagtgagaagtgagaggagttggtcttggtcatacaaccatatatggatgactaaaattatttttcttaa...

Basic information

species Glycine max
transcript GLYMA10G02410.1
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14010976|gb|BG725898.1|BG725898
EST:     TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
EST: gi|7234672|gb|AW570007.1|AW570007
EST:     TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
EST: gi|24205678|gb|BU964931.1|BU964931
EST:     TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
EST: gi|23064134|gb|BU578907.1|BU578907
EST:     TC-CAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
EST: gi|14010966|gb|BG725888.1|BG725888
EST:     TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
EST: gi|33389718|gb|CA852925.1|CA852925
EST:     TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAGCTTAGCATCGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
EST: gi|208169524|gb|GD972329.1|GD972329
EST:     TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAAGCTTAGCAT
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAA-GCTTAGCAT
EST: gi|58023725|gb|CX710466.1|CX710466
EST:     TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG                         GAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC
genomic: TCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgata ... tgtatttcagGAGAGAAGCTTAGCATTGACTGAGAACCAACCATTACCTCAGTTGTGTAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGgttagtgatatgtgtgtatgagggtgtatctagtgagaagtgagaggagttggtcttggtcatacaaccatatatggatgactaaaattatttttcttaa

- - - - - - -  GCAGCT
- - - - - - - - CAGCTC
- - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG