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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt...

Basic information

species Glycine max
transcript GLYMA10G02400.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatg-tcatttgtttata---ttcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
|||||||||||||||||||||| ||| |||||||| ||||| || || |||||||||||||||||||||||||| || || |||||   |  ||  |  |   |   | | |       | |||| | |   |    |||  |||  |  |||| ||    |  || |     |  |||         
TGGTTTGGTGAAGGAGAGAAGTTTGTGAAAGCTGTATTTTCACTGGCAAGCAAAATTGCTCCAAGTGTTATTTTCGTGGATGAGgtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtg----ttgtatag-------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatgtcatt-tgtttatattcctttgaa---gttctcttttcctttattttaaatattatttttaatactttttagaat-tcatatgagccattt
|||||||| || || ||||| |||||||||||||| ||||| || || |||||||||||||| ||||| |||||||| || |||||   |  |  |  |  || || | || ||  || |||    || || |||     |  ||  ||||||    |  | |  ||| ||    |||||         
TGGTTTGGCGAGGGTGAGAAATATGTCAAAGCTGTGTTTTCACTTGCAAGCAAAATTGCTCCTAGTGTCATTTTTGTGGATGAGgtcagtcaacaaaattcttatggtcattttttttggaatgaattgtcgtttggcccaccttttatattaccaatgtttcagtttggaccaccatatacct-----

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgt-tgctttatcatgtcatttg--tttatattcctttgaagttctctt--ttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
|||||||| ||||||||||| ||||| |||||||| || ||  |||| || ||||| |||||||| ||||| ||  |||| ||||| ||||| | |||||   |||  |||||  || || |   ||   ||  |  |  |||  |  |||  |  |  || | ||   ||                  
TGGTTTGGCGAAGGAGAGAAATATGTAAAAGCTGTTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcag------------------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 18
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctt-tatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaa-atattatttttaatactttttagaattcatatgagc-cattt----------------------------------------
||| ||||||||||||| || |  || |||||||| ||||| || || || ||||||||||||||||| |||||||| ||||||||   || ||  |      |  |  ||   |  ||    ||   ||   || ||     | |    | | |   || ||| |  |   | ||| |   |||                                          
TGGCTTGGTGAAGGAGAAAAATTCGTGAAAGCTGTTTTTTCACTGGCAAGTAAAATTGCTCCAAGTGTAATTTTTGTGGACGAGgtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggacaccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctcatttatcctgctcttgtttttattttttag

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G157621_T02 (Zea mays), 5'ss of exon 22
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgct--ttatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
|||||||| || ||||| || ||||| |||||||| ||||| || || ||||||||| |||| ||||||||||| || || ||||||  |  || || |  |  |   | ||  |      | |   |  |    | ||  |||   |||  |||   | || | ||  |                
TGGTTTGGAGAGGGAGAAAAATATGTGAAAGCTGTTTTTTCACTTGCAAGCAAAATTTCTCCTAGTGTTATTTTCGTGGATGAGgttagtgattttcttaacggtcactgatgatatgcctatgacataataagttgtagcttactcattgatttgtgtcctgtatattag---------------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 2
---------TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
         |||||||||||||| ||||||||||| || ||||| || || ||||| || ||||| || || |||||||| ||| |||| |||||     |   |   ||   |||||  ||  |    | | |        | |||   || |  | ||||| |  |||| | ||                 
GCTAACCAGTGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgta----tgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaacttctttttttga--ctttctggag----------------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G126453_T02 (Zea mays), 5'ss of exon 8
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
|||||||||||||| ||||||||||| || ||||| || || ||||| || ||||| || || |||||||| ||| |||| |||||     |   |   ||   |||||  ||  |    | | |        | |||   || | || ||||| |   | |  ||                  
TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgta----tgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaactttt-tttttgactttctgcag------------------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G052403_T01 (Zea mays), 5'ss of exon 14
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
|||||||||||||| ||||||||||| || ||||| || || ||||| || ||||| || || |||||||| ||| | || |||||        || |      | ||| |||  |    | |  |  |    | ||    ||    | | ||| |   | |  ||                  
TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCCCCCAGTGTTATATTTATCGATGAGgtatg-----caagcagacaggttacattagtaaacactgttggtacagtgtacaccaa---ctgtctttgactttctgcag------------------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 3
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
|||||||||||||| ||||||||||| || | ||| || || ||||| || ||||| || || |||||||| ||| |||| |||||     |   |   ||   |||||  ||  |    | | |        | |||   || |  | |||||   ||||| |  |                 
TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGTTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgta----tgcaagcacacaagtttactttagtaatcactaccggcacagtatataccaacttctttttttttgactttctgcag----------------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 22
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgt----tgctttatcatgtcatttgtttatattcctttgaagttctcttttcctttattttaaatattatttttaatactttttagaattcatatgagccattt
||||||||||| ||||||||||| || |||||||| || ||| |||| || || || |||||||| || ||||||||||| |||||    ||||  |   |   |   | |   || ||| |  |  |  |  ||||||| | ||    | ||| |||   ||    |  || | || |         
TGGTTTGGTGAGGGAGAGAAGTACGTTAAAGCTGTTTTCTCTTTAGCAAGTAAGATAGCTCCAAGCGTCATTTTTGTTGATGAGgtatgttgctagacgttaagaacagctctcatacctgttta--ttacagttcctttttctttctgaatatcttttgaacgggatcaaaattatgtag-------

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 5'ss of exon 22
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgt-tgctttatcatgtcatttg----tttatattcctttgaagttctcttttcctttattttaaatattatttt----taatactttttagaattcatatgagccattt
||||||||||| ||||||||||| || ||||||||||| ||  |||| ||||| ||||| |||||||| ||||||||||| ||||| || || |  || | |        | | | |||  |   |  | |     |  |  |||||  || | | |     | ||  || |   || ||||   |  ||   
TGGTTTGGTGAGGGAGAGAAGTACGTTAAAGCTGTCTTCTCCTTAGCGAGCAAGATTGCGCCAAGTGTCATTTTTGTTGATGAGgtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcat--tattcag--

upper sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 22
TGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttatcatgtc-----atttgtttatattcctt--tgaagttctcttttcctttattttaaatat-tatttttaat-------actttttagaattcata-tgagccattt-------------------------------------------------------------------
|||||||| ||||||||||| |||||||||||||| || |||||||| || |||||||| || |||||| ||||||||||||||||   || |  |  ||     |||  |  | |    ||  |  | |  || |  |  || || |   |   |   |||| |       ||| || |    |  || |  ||||||                                                                    
TGGTTTGGGGAAGGAGAGAAATATGTCAAAGCTGTGTTCTCTCTAGCTAGTAAAATTGCACCTAGTGTTGTTTTTGTTGACGAGgtaagttgaataaatctttaaattcatccacaacttttgctataatgttcctcactctttttatgggtccatggatttagtgacggtaactgttcaatccttttaattcgccattctgatctttagtttctttcttcttttcctgttaaaaaatttattgttaacttagatttattgtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279552|gb|BI943495.1|BI943495
EST:     TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAG                         GTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
genomic: TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttat ... attgtggcagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
EST: gi|24135420|gb|BU925930.1|BU925930
EST:     TTATTTTTGTTGACGAG                         GTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
genomic: TTATTTTTGTTGACGAGgttgctttat ... attgtggcagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
EST: gi|192316675|gb|FK009360.1|FK009360
EST:     TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAG                         GTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
genomic: TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttat ... attgtggcagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
EST: gi|19347186|gb|BM892066.1|BM892066
EST:     TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAG                         GTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
genomic: TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttat ... attgtggcagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
EST: gi|37994806|gb|CF806395.1|CF806395
EST:     TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAG                         GTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
genomic: TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttat ... attgtggcagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
EST: gi|20811998|gb|BQ296476.1|BQ296476
EST:     TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAG                         GTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG
genomic: TCTTTTCTCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGgttgctttat ... attgtggcagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATG