1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GCTCGTTTGTGGATTAAGGCCTCATACACAAAGAGTAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGgtaaaaagagcatcttgctaggttcatttttttttcttcagtgacttgaaattcttagatctatgaggtttatttaaaatggatgatgcaattatgtctcattgttggtttccttcag
species | Glycine max |
transcript | GLYMA09G41510.1 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAG ATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAATEST: gi|26269327|gb|CA820390.1|CA820390
genomic: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGgtaaaaagag ... tttccttcagATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAAT
EST: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAG ATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAATEST: gi|51341176|gb|CO982493.1|CO982493
genomic: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGgtaaaaagag ... tttccttcagATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAAT
EST: CAGCCTGGATTAGACCAAGGAAAG ATTGTTAGCGCNNNNCAGGCTGGGGATATCCAATTTCTTGATATAAGAAATEST: gi|15201009|gb|BI424645.1|BI424645
genomic: CAGCCTGGATTAGACCAAGGAAAGgtaaaaagag ... tttccttcagATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAAT
EST: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCA-GGAAAG ATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGEST: gi|8282914|gb|BE020475.1|BE020475
genomic: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGgtaaaaagag ... tttccttcagATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTG
EST: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAG ATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAAT
genomic: TAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGgtaaaaagag ... tttccttcagATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGTTTGTGGATTAAGGCCTCATACACAAAGAGTAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGgtaaaaagagcatcttgctaggttcatttttttttcttcagtgacttgaaattcttagatctatgaggtttatttaaaatggatgatgcaattatgtctcattgttggtttccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA