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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCACAACACAGAGCATGACCCTCCATACTGGAGAGGTCCTGTTTGGATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggctaaaaatatctgcaaatattcccactatatttataccctcctgaaactaaatttttggtttaaatcttgtag

Basic information

species Glycine max
transcript GLYMA08G10870.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10870.2 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 5'ss of exon 20
ATGAAGCACAACACAGAGCATGACCCTCCATACTGGAGAGGTCCTGTTTGGATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAGgtaa--tatggactggccaaggctaaaaatatctgcaaatattcccactatat---ttataccctcctgaaactaaatttttggtttaaatct----tgtag
||||||| |||||| |||||||| || ||||| ||||||||| |  |||||||||||||||| ||||  |||| ||| | ||| ||||| ||  |  | |||||  | |  |   |     |||||| |  | | ||  | || ||  | | |   || |||  |    |   | |  |  |    |   |||    || ||
ATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCACTATGCACATGgtaaactctataacagatgctgctaaacaactattcagcttttacccttctgtaaattttactgtttgcacgatgatctaataacattgttctgctctgaag

upper sequence: GLYMA08G10870.2 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G071675_T01 (Zea mays), 5'ss of exon 3
ATGAAGCACAACACAGAGCATGACCCTCCATACTGGAGAGGTCCTGTTTGGATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAGgtaa--tatggactggccaaggctaaaaatatctgcaaatattcccactatatttataccctcctgaaactaaatttttggtttaaatcttgtag
|||||||  || |||||||||||||| || || ||||||||| |  |||||||||||||||| ||||   ||| ||| ||||| || || ||  |  |  ||||  | |  | | ||| ||  || |    | ||||||   | |  ||    | ||          |  ||   || || |||    | |||||
ATGAAGCGTAATACAGAGCATGACCCCCCTTATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATAgtaagctctttaattgcctagtttataccc-tttgcaaacccttctgctggcataatg---------atatagcattctgcttt----cctgtag

upper sequence: GLYMA08G10870.2 (Glycine max), 5'ss of exon 22
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
ATGAAGCACAACACAGAGCATGACCCTCCATACTGGAGAGGTCCTGTTTGGATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggc---taaaaatat-ctgcaaatattcccact-atatttataccctcctgaaactaaatttttggtttaaatcttgtag---------------------------------------------
||||| |  ||||||||||||||||| || ||||||||||||||  ||||||| |||||||||||||| |||| ||| |||||||||||||| ||| ||||||||||  |   |  ||  |    ||||| |  |   |||   ||  ||| | ||||  |  ||     |  | ||| | |   ||     ||  |                                              
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag

upper sequence: GLYMA08G10870.2 (Glycine max), 5'ss of exon 22
lower sequence: EFJ24054 (Selaginella moellendorffii), 5'ss of exon 21
ATGAAGCACAACACAGAGCATGACCCTCCATACTGGAGAGGTCCTGTTTGGATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggctaaaaatatctgcaaatattcccactatatttataccctcctgaaactaaatttttggtttaaatcttgtag
|  |  |  ||||| ||||||||| |||| ||||||||||| ||||| ||||| |||||||| ||     | | |||  | || ||| | |||||  |||||||   |          ||||  ||   | |   | |    ||||| | | | |  |                                   
AACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGAGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTACTACTCGCAAGgtaacgcgtgtgacttttggctgcaagcgttt---attccatccactgtgtgtgtttctag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072964|gb|AW102351.1|AW102351
EST:     GATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAG                         AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACANAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAGgtaatatgga ... aatcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACAAAGAATTGAGAA