Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
Basic information
species | Glycine max |
transcript | GLYMA07G38050.2 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 22
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgtt-catgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
||||||||| |||||||| |||||||| ||| | || ||||| || || |||||||| |||||||||||||| || ||||| ||||| ||||| || ||||| || | | || | | | ||| ||| || |||| ||| ||| ||||| | || |||| | |
GAAGAAGTTAGACCGCTATAAGAATCCATGGTTAGAGTTGAAAATCCAGTATGGACAGAACAAAGGGAAGTTCTATAATGAGGAATGCGACCGTTTTATGgtatg----ctctatcataccatctcactttctgcacacatttgttttcaaacgtgacatgtctaattagttgtcacatttcag--------------------------------------------------
upper sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 22
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttcct-tgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
||| ||| | |||||||| ||||| |||||| | || ||||| || || ||||| || || ||||||||||||||||| ||||||||||| || || ||||| || | | ||||| | || |||||||| | ||| || | | | ||| || | |
GAAAAAGCTAGACCGCTATAAGAACCCTTGGTTAGAGTTGAAAATTCAGTATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctacac---cacaattgttcctgaaca-atttaagcccctttcttttt-tgcattttaacagcttgtgtctattacag---------------------------------------------------
upper sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 22
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
||||||||| |||||||||||||| || ||| | || ||||| || |||||||| ||||| ||||||||||| || ||||| ||||||||||| || ||||| || | | | || | ||||| | || | | || | | || | | | || | || || || | | ||| | |||| |
GAAGAAGTTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAATATGGCCAAAATAAAGGGAAGTTCTATAATGAGGAATGTGACCGCTTTATGgtatgttccct-caccatattatgtttatctatgt--gagtacatgttatgtctactaagctgggtgtcacattccagctt-tgcatggtgcacaaa---cttggat--------------------------
upper sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
lower sequence: GRMZM2G010085_T02 (Zea mays), 5'ss of exon 14
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
||||||| | |||||||||||||| || ||| | || ||||| || || || || ||||| ||||||||||| || || || ||||||||||| || ||||| || || | | || | | ||||| || | || | | | | | | | | || | | | || |
GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgtttttctcaccatgttatgtgtatttatgt---atttgagtacatgacatggctactaagctggagttacattccag---------------------------------------------------
upper sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 5'ss of exon 22
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
|||||| |||| ||||||| || |||||||| ||| ||||||| |||||||| || |||||||| ||| | ||||||||||| |||||||| |||||||| || || | | |||| ||||||| | | | || || | || | | | ||| | | || ||| || |
GAAGAAACTGGATCGCTACAGAAACCCTTGGCTGGAACTGAAGATTCAATATGGTCAGAACAAAGGCAAGCTGTACAATGAAGAGTGTGACCGTTTCATGgtatgt------ctttttctcgtttccctttttgct--gttctgtctcattaattatatcatgaagtttttgactgttgaggaactttggtggtgaaaaacag------------------------------
upper sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 22
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
|||||| |||| ||||||| || || ||||| ||| ||||||| |||||||| || |||||||||||| | ||||||||||| || ||||| |||||||| ||| || ||||| | | |||| | |||| || || | ||| | ||| || | || | || || | | |||||| ||
GAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAACTGAAGATTCAATATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTCATGgtatgacatctattt------atcaaactctttgttgagatttcattgttattgttt-tattc-----------taatatgatattgacccgatgaa---cttgtgattatcag-------------------
upper sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 22
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
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GAAGAAGTTGGATCGCTACAAGAATCCATGGCTGGAACTAAAGATCCAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGCGATCGTTTTATGgtgagaattgcaatcatctctctagtttgtttgatacaaat------------gttggtgtg----tttttgtttgacgattgatcttccgagtg---tattcatgcctccatacttcatgtag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21601864|gb|BQ612195.1|BQ612195EST: ATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATG ATTTGTATGATTCACAAACTTGCTGCTAAG
genomic: ATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatt ... aaacttgcagATTTGTATGATTCACAAACTTG--GCTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA