Sequence
atgc intronic sequence ATGC exonic sequenceGGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAGgtatgataaaattaaccttggcaatgtggatctgatacttcattggctaattgttgcatcaggaagtacttctctcatgcatattttatttgatgtcttt...
Basic information
species | Glycine max |
transcript | GLYMA07G06160.1 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 22
lower sequence: LOC_Os07g23990.1 (Oryza sativa), 5'ss of exon 20
GGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAGgtatgataaaattaa-ccttggcaatgtgga-tctgatacttcattggctaat----tgttgcatcaggaagtacttctctcatgcatattttatttgatgtcttt----------------------------------
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GGCTTGAATACTTTGAATCAAAAGTTATCGAGCAACAGGAAGCTGCACGCAATGGAACTCGGAAACCTGATGCATCAATTGCTAGTAAAGGGCATCTAAGgtaaaatatagttaaatttcaccaacctaaagtatcgtaacttcttagagacttctcttttgcatttatagatatctaggtacagtatactttttataacatcttcactttgtactgactgttctactttgcgtttgcag
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 22
lower sequence: AT1G01320.2 (Arabidopsis thaliana), 5'ss of exon 22
GGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAGgtatgataaaatt---aaccttggcaatgtggatctgata----cttcatt--ggctaattgttgcatcaggaagtacttctctcatgcatattttatttgatgtcttt------
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GGCTAGAATACTTTGAGTCCAAGGCTTTTGAACAACAAGAAGCTGCGCGAAATGGTACTCCTAAGCCAGACGCGTCTATAGCCAGCAAAGGCCACCTAAGgtcaaacaactttctgatatctccttatttgttgtttataagttttttattttgtttgaatgtgtcaattaagtgtactccttggccagatccttaagttgataatgttttgcag
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 22
GGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAGgtatgataaaattaaccttggcaatgtggatctgatacttca-ttggctaattgttgcatcaggaagtacttctctcatgcatattttattt-gatgtcttt
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GGCTCGAGTACTTTGAGTCAAAGGCTTTTGAACAGCAAGAAGCTGCAAGAAATGGGACTCGAAAACCTGATGCATCCATAGCCAGCAAAGGCCACCTAAGgtatgccagcattgtccttggcaagattgacc--attctgcaattgatcatgcataagaagttgatagggtgcacagttgcccctgctattttgatgattcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9987721|gb|BE661829.1|BE661829EST: AATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAG TGTGTCAGATTTGCTTGACTACATTAATCCTAATACTAAAGGGAGAGATGC
genomic: AATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAGgtatgataaa ... aatttgccagTGTGTCAGATTTGCTTGACTACATTAATCCTAATACTAAAGGGAGAGATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAGgtatgataaaattaaccttggcaatgtggatctgatacttcattggctaattgttgcatcaggaagtacttctctcatgcatattttatttgatgtcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG