Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGGGTTGCGACTGAAGCGTGACATTACTGAATATGGAGAATTTCTGCGTAGTTTCAATGCTCCTTCTGTTGATGAAAAGTTTGAATTGTTGGGCATgtaagttgaacgacatgcaaatcttttcaaattttttcctgtctcccattttttacatactaatttcttaacactttctatag

Basic information

species Glycine max
transcript GLYMA07G05160.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 22
TGGAGGGTTGCGACTGAAGCGTGACATTACTGAATATGGAGAATTTCTGCGTAGTTTCAATGCTCCTTCTGTTGATGAAAAGTTTGAATTGTTGGGCATgtaagttgaacgacatgcaaatcttttcaaattttttcctgtctcccattttttacatactaatttc-ttaacactttctatag-------
||| ||  ||||| |||||||||| || || || ||||| |||||| |||| ||||| ||||||||| | || ||||| || ||||||||||||||||||||||||     |  |    |   | ||| || |||     | |  |||| || | |  || | |     |||   |  | | |       
TGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcggaagtttttgaatatctcagatctttc---atttagcattcttaaaaatctcactctaccaacgactctttttgtctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193531473|gb|FK490929.1|FK490929
EST:     CGTAGTTTCAATGCTCCTTCTGTTGATGAAAAGTTTGAATTGTTGGGCAT                         AATGGCCAATGTATTTATAGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA
genomic: CGTAGTTTCAATGCTCCTTCTGTTGATGAAAAGTTTGAATTGTTGGGCATgtaagttgaa ... ctttctatagAATGGCCAATGTATTTATAGTTGCTCCTGAGAGCCTTTCAACTTTGTTTGA